Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01053 ATGCTGGCATTTGCGGAGAAGCTAGGGTGGAGAATTCAGAAGCATGACGAAGCTGCTGTGGAACAATTCTGCGCTGAAACTTGTGTCAAGAGACATGTGCTCAAGGTTTGGATGCACAATAACAAACACACTCTTGCTAATTCTGAGCAACGTTCTGCTGGGAATGGATCGAACCACATGAACAGCACCACAGTAATTGAGAATTCTGAATTCTCCTAA 219 0.4475 MLAFAEKLGWRIQKHDEAAVEQFCAETCVKRHVLKVWMHNNKHTLANSEQRSAGNGSNHMNSTTVIENSEFS 72
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01053 72 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 1 45 - -
Pumo10g01053 72 SUPERFAMILY Homeodomain-like 1 45 IPR009057 -
Pumo10g01053 72 Gene3D - 1 60 - -
Pumo10g01053 72 NCBIfam homeobox domain, ZF-HD class 1 43 IPR006455 -
Pumo10g01053 72 MobiDBLite consensus disorder prediction 45 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01053 Pumo-Chr10 13661101 13661612 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01053 1 45 ZF-HD Transcription Factor Family AT4G24660 80.000 5.45e-23 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01053 - - gmx:100820567 147.902
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01053 10 13661101 13661612 Pumo10g01053 10 13661101 13661612 ECH
Pumo9g01410 9 41273026 41274483 Pumo10g01053 10 13661101 13661612 PCT