Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01052 ATGGAATTTGACGAGCACGAGGACCAAGAGGAAGAGGAGGAGGAGGAGGAAGAGGAGGAAATGGGATTCTCAGCGGCGGCGGCGAGTTACAACTCGCTGGGGAACGCGGCGGCGAGGTCGAAAGTGAGCGGCGCCGAGGGAGCTGCTGCCACGGTGAATTCCGGTCGCAAAGGGACGGTGAGATACAGAGAATGTCAGAAGAACCACGCCGTCAGCATCGGCGGCCACGCCGTCGACGGCTGCTGCGAGTTCTTGGCCGCCGGAGAGGACGGCACGCTGGAGGCCGTAATTTGCGCCGCCTGTAACTGTCCACCGCAATTTCCACCGCAAGGAGATCGACGGCGAAACCAGCCCTTACCAACACCGTTCGCAGCCGCAGCCGCAGCCTCTGCACCCTCAGTACCACCACCAATTCTCCCCTTACTACCACCGCGCGCCACCGCCTTCCGCCGCCGGGTACCTCCACCACCACCTGGTGACTCCTCCGGTGTCGCAGCACCGGCCCTTGGCTCTGCCACCGTTAGCTTCCGGAGGAATGTTCAGTAG 546 0.6319 MEFDEHEDQEEEEEEEEEEEMGFSAAAASYNSLGNAAARSKVSGAEGAAATVNSGRKGTVRYRECQKNHAVSIGGHAVDGCCEFLAAGEDGTLEAVICAACNCPPQFPPQGDRRRNQPLPTPFAAAAAASAPSVPPPILPLLPPRATAFRRRVPPPPPGDSSGVAAPALGSATVSFRRNVQ 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01052 181 MobiDBLite consensus disorder prediction 148 162 - -
Pumo10g01052 181 Pfam ZF-HD protein dimerisation region 60 104 IPR006456 -
Pumo10g01052 181 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 21 110 - -
Pumo10g01052 181 MobiDBLite consensus disorder prediction 1 22 - -
Pumo10g01052 181 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 62 111 IPR006456 -
Pumo10g01052 181 MobiDBLite consensus disorder prediction 148 181 - -
Pumo10g01052 181 MobiDBLite consensus disorder prediction 1 56 - -
Pumo10g01052 181 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 61 107 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01052 Pumo-Chr10 13660428 13660973 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01052 61 137 ZF-HD Transcription Factor Family AT3G50890 48.810 5.45e-22 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pumo10g01052 ZF-HD_dimer 8.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01052 - - gmx:100820567 161.77