Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01047 ATGGAGGCCATTGATTGGATTCACAAGGTCCGATCGCATTTTGGTTTTGGTCCTCTCTGTGGATATCTATCTATAAATTACTTAGACCGATTCCTTTCTTCATATGAATTACCAGGAAGAGCTTGGACAATGCAATTGTTGGCTGTGGCGTGTTTATCTTTGGCAGCCAAAGTAGATGAGACAGAAGTTCCAATCTCTCTTGATTTGCAGGTGGGTGAATCGAAGTTTTTATTTGAGGCTAAAACCATACAGAGAATGGAGCTTCTTGTACTAAGCACATTGAAGTGGAGAATGCAAGCAATTACTCCTTTTACCTTCCTCGATTACTTCCTTTGCAAGATCAATGGTGATCAAAGTTCATCATTAAAGTCTTCAATTATGCGATCCATCCAACTTATATCGGGCACTGCAAGAGGAATTGACTTCTTGGAATTCAAACCATCAGAGATTGCAGCAGCAGTGGCTATGTATGTCATGGGGGAAACCCAAACAGTTGACACTGGGAAAGCAATTTCTGTTCTGATTCAACACGTAGAAAAGGAGAGACTATTGAAGTGTGTTAAAATGATCAATGAGTTGTCATCCAACAGTGGCTCTGCCAAGGATTCAAGTGCTTCTGTCACTTGCTTACCCCAAATCCCAATAGGGGTGTTAGATGCTTTTTGCTTCAGCTACAGAACTGATGACACAAATGCTGGTTCATGTGTTAATTCTTCACATAATGGCCCTGATGCTAAAAGGAGGAAGTTAAACAAAACCTGTGGAGCTGAGCTATTGTAG 780 0.4103 MEAIDWIHKVRSHFGFGPLCGYLSINYLDRFLSSYELPGRAWTMQLLAVACLSLAAKVDETEVPISLDLQVGESKFLFEAKTIQRMELLVLSTLKWRMQAITPFTFLDYFLCKINGDQSSSLKSSIMRSIQLISGTARGIDFLEFKPSEIAAAVAMYVMGETQTVDTGKAISVLIQHVEKERLLKCVKMINELSSNSGSAKDSSASVTCLPQIPIGVLDAFCFSYRTDDTNAGSCVNSSHNGPDAKRRKLNKTCGAELL 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01047 259 CDD CYCLIN_AtCycD-like_rpt1 2 96 - -
Pumo10g01047 259 CDD CYCLIN_AtCycD-like_rpt2 101 190 - -
Pumo10g01047 259 Pfam Cyclin, N-terminal domain 3 98 IPR006671 -
Pumo10g01047 259 Pfam Cyclin, C-terminal domain 101 201 IPR004367 -
Pumo10g01047 259 Gene3D - 100 189 - -
Pumo10g01047 259 Gene3D - 3 99 - -
Pumo10g01047 259 PANTHER CYCLINS 4 195 IPR039361 -
Pumo10g01047 259 FunFam D6-type cyclin 95 188 - -
Pumo10g01047 259 SUPERFAMILY Cyclin-like 83 195 IPR036915 -
Pumo10g01047 259 SMART Cyclin_C_2 101 213 IPR004367 -
Pumo10g01047 259 SMART cyclin_7 5 92 IPR013763 -
Pumo10g01047 259 SUPERFAMILY Cyclin-like 2 98 IPR036915 -
Pumo10g01047 259 FunFam D6-type cyclin 1 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01047 Pumo-Chr10 13563265 13564924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01047 2 235 Core Cell Cycle Gene Families AT2G22490 49.383 1.46e-73 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01047 K18810 - gmx:547739 456.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01047 10 13563265 13564924 Pumo10g01047 10 13563265 13564924 ECH