Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01029 ATGCAGATCTCATTCATCAAAGAAAAGAAAAAAAGTGATGCAGATAAACCGAAAAGGACAAGGAATCCGAAAGTAACGTTTGTCATCAAGCAAACTCCAAAGAGCGCAAAGCCTAAGCAAAAGACGATGAACTTCAATATTCGCTTCCTGTTCTTGATGCTGCAATTCCTCGTGGTTCTGGGTTGTGCTACTAAACCAGGGGTACGATTGGATATTCAAGATAAACATGTGATAATGGATAATGGCATAGTCCAGGTCAACTTATCAAATCCTGAAGGAATTGTCACGGGAATTCAATATAATGGCATCGACAATTTGCTCGAAGTTCTTAACGACGAATCTAACAGAGGGTACTGGGATATCGTATGGGACGAAGGCGGAGAAAAAAGAACAAAAAAAGGAGCAAAGGGAAAGGGTAGATTTGACAGAATGGAAGCCACGAATTTTACGGTGATAGTGGAAAATGAGGAACAAGTAGAGCTATCTTTCACGAGAACATGGAATGCCTCTCTTGAAGGGAAACTTCCACCACTCAATATTGATAAAAGGTTTATAATGCTTAGTGGTTCATCTGGATTTTACACCTATGCCATTTACGAGCATTTGAAGGAATGGCCAGCCTTCGATCTTGACAATACTAGGATCGCATTCAAGCCTAGGAAAGACAAGTTCCATTACATGGTTGTAGCGGACAACAGACAAAGATTTATGCCTCTGCCTGATGACCGGTCACCGCCAAGAGGTCAAGTTCTGGCCTACCCAGAGGCTGTGCGCCTTGTTGACCCCGTCGAGCCTCAATTCAAAGGAGAGGTAGATGACAAATATGAATACTCGTGCGAGAGCCGATACAACCGTGTTCACGGTTGGGTAAGCGTTGATCCATTGAATTCCACTGGATTCTGGCTAATTACGCCTAGCTATGAGTTCCGATCTGCTGGACCCCTCAAGCAATATCTTACTTCTCACGTTGGCCCCACCACACTCTCTGTATTTCATAGCACCCATTATTCAGGGGCGGATCTGATAATGCAATTTGGGCCCAATGAGCCGTGGAAGAAAGTCTATGGGCCCATATTTATATACCTTAATTCTCAATCTAACGGATTAGGCCCAATCGGGCTCTGGGAGGACGCCAAACAACAGATGGTCAATGAAGTTGAAAGCTGGCCCTATACATTTCCAGCTTCTGAGGACTTTCTCTCATCTGACCAACGAGGTAAAGTTGAAGGTAGATTGCTTGTCCGAGACAGGTACATCAGTGATGCATTCATCCCAGTTAGCGGTGCTTATGTGGGACTAGCAGCCATAGGAGAGGTTGGATCTTGGCAAAGAGAATGTAAGGGTTATCAATTTTGGACCATCACCGATGATAAAGGCTATTTCTCAATTATTAACATACACCCTGGGGACTATAATCTCTACTCCTGGGTCAATGGATTCATTGGCGATTATCAATTCGATAGCGTCATCAACGTAACTGCAGGTTGTGAAATTAATGTGGGTGAGGTTGTTTATGAGCCACCTAGAGATGGCCCTACGTTGTGGGAAATTGGAATCCCTGATCGTTCAGCTGCTGAGTTCTATGTTCCTGACCCAAATCCCATGTACATTAACAGACTTTATGTCAACCATCCAGACAGGTTTAGGCAATATGGCTTGTGGGAGAGATATGCTGAGTTGTATCCAAATGAAGACCTAGTTTACACTGTTGGCATTAGTGACTACAGAAAAGATTGGTTCTTTGCTCAGGTTAACAGGAAGAAAGACAATGGCACTTTCATAGGAACCACATGGCAAATTAATTTCAAGCTTGATAGTGTGAACACCAACGGATCCTACACATTGCAAGTGGCTCTGGCATCTGTGCATTCTGCTGAATTAGAGGAGAAATTTAACATCGAGTCGGATGAGATTGCGGGGTGGTGGTGGTGA 1932 0.4379 MQISFIKEKKKSDADKPKRTRNPKVTFVIKQTPKSAKPKQKTMNFNIRFLFLMLQFLVVLGCATKPGVRLDIQDKHVIMDNGIVQVNLSNPEGIVTGIQYNGIDNLLEVLNDESNRGYWDIVWDEGGEKRTKKGAKGKGRFDRMEATNFTVIVENEEQVELSFTRTWNASLEGKLPPLNIDKRFIMLSGSSGFYTYAIYEHLKEWPAFDLDNTRIAFKPRKDKFHYMVVADNRQRFMPLPDDRSPPRGQVLAYPEAVRLVDPVEPQFKGEVDDKYEYSCESRYNRVHGWVSVDPLNSTGFWLITPSYEFRSAGPLKQYLTSHVGPTTLSVFHSTHYSGADLIMQFGPNEPWKKVYGPIFIYLNSQSNGLGPIGLWEDAKQQMVNEVESWPYTFPASEDFLSSDQRGKVEGRLLVRDRYISDAFIPVSGAYVGLAAIGEVGSWQRECKGYQFWTITDDKGYFSIINIHPGDYNLYSWVNGFIGDYQFDSVINVTAGCEINVGEVVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPMYINRLYVNHPDRFRQYGLWERYAELYPNEDLVYTVGISDYRKDWFFAQVNRKKDNGTFIGTTWQINFKLDSVNTNGSYTLQVALASVHSAELEEKFNIESDEIAGWWW 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01029 643 Pfam Polysaccharide lyase family 4, domain II 427 499 IPR029413 -
Pumo10g01029 643 MobiDBLite consensus disorder prediction 1 22 - -
Pumo10g01029 643 Gene3D - 401 501 - -
Pumo10g01029 643 CDD RGL4_M 404 501 IPR029413 -
Pumo10g01029 643 CDD RGL4_N 73 366 - -
Pumo10g01029 643 Pfam Rhamnogalacturonate lyase family 67 271 IPR010325 -
Pumo10g01029 643 Pfam Polysaccharide lyase family 4, domain III 513 632 IPR029411 -
Pumo10g01029 643 SUPERFAMILY Starch-binding domain-like 403 501 IPR013784 GO:0030246
Pumo10g01029 643 Gene3D - 511 636 - -
Pumo10g01029 643 SUPERFAMILY Galactose-binding domain-like 510 632 IPR008979 -
Pumo10g01029 643 FunFam Rhamnogalacturonate lyase B 401 500 - -
Pumo10g01029 643 Gene3D - 70 351 IPR014718 GO:0030246
Pumo10g01029 643 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 73 635 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01029 Pumo-Chr10 13327962 13333910 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01029 68 632 Polysaccharide Lyase AT1G09890 65.493 0.0 768
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01029 K18195 - gmx:100786488 1218.76