Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01028 ATGCCATCACTGGGGGTGCAACTTACTATTCAAGATAATCATGTGGTGATGGAGAATGGCATACTAAAAGTCACCTTATCAAATCCTGGGGGAATTGTGACTGGAATACAGTATAATGACATCGACAACTTGCTTGAAGTTTTGAATGATGAATCTAATAGAGGGTATTGGGACCTTGTTTGGAGCTCACCAACAAGTACAGGAACAAGTGGTACATTTGATGTCATCAAGGGAACAACTTTCAAAGTTATGGTTGAAAATGAGGACCAAGTTGAGTTATCCTTCAGCAGGACGTGGGACGTCTCTCTCGAGGGCAAGTTGGTTCCTTTAAATATTGATAAAAGGTTCGTAATGCTTCGTGGTTCTTCCGGCTTCTACTCCTATGCGATTTATGAGCACTTAGAGGAGTGGCCAGCTTTCAATCTTGACGAAACAAGAATTGCTTTCAAGCTTAGGAAAGACAAGTTCCATTATATGGCGATGGCAGATAATAGACAAAGAAACATGCCTCTTCCAGATGACCGATTACCACCTAAGGGCAAAGCCCTTGCCTACCCAGAGGCAGTGCTACTAGTCAATCCCATCGAACCAGAACTTAAAGGAGAGGTGGATGATAAGTACCAATATTCATGTGACAACAAAGATAGCCAAGTTCATGGATGGATCTGCATGGATCCTGCAGTGGGATTCTGGCTAATTACGCCCAGCAATGAGTTTAGATCTGGTGGACCCCTTAAACAAAACTTAACTTCCCATGTGGGGCCTACCACTCTTGCTGTGTTTCTGAGTGCCCATTATAGCGGAGAGGATCTGGTGCCTAAGTTCAATGCTGGTGAGGCATGGAAGAAAGTTTTTGGTCCAGTTTTCATTTATTTGAATTCTCCCTATGATGGAAGTGACCCCCTTAAGCTATGGGAAGACGCTAAACTACAGATGTCAGTGGAAGTTCAAAGCTGGCCTTACAGTTTTCCTGAATCAGAGGGTTTTGCAAAGTGGGACGAACGTGGTAATGTTAGTGGCAGGCTTTTGGTTAGAGAGAGGTATATAAACGATGACTATATATCAGCAAAAGGAGCCTATGTTGGCTTGGCTACACCAGGAGACGTGGGATCTTGGCAAAGAGAATGCAAGAATTATCAGTTTTGGGCTAAAGCAGACGATGATGGCTACTTCTCCATCAGCAATATACGTGCTGGCGACTACAATGTTTACGCGTGGGTACCTGGTTTTATTGGTGACTATAAATATGACGTAGTTATGAACATAACAGAAGGTTGTGACATTGACCTTGGTGATCTTGTATATGAACCCCCAAGAGATGGCCCAACATTGTGGGAAATTGGCATCCCTGATCGCTCAGCTGCTGAGTTCTACGTTCCTGACCCAAATCCCAAATATATCAACAAACTCTATGTTAATCATCCTGACAAGTTTAGGCAATATGGGTTATGGGAGAGATATGCAGAACTATACCCTGACAAAGACTTGATCTACACAATTGGTGTTAGTGACTACACCAAAGATTGGTTCTTTGCTCAAGTTACCAGGAAGAAAGATGATAACACATATCAAGGAACCACATGGCAAATCAAGTTTCAGCTTGATAACGTGAACAAAAGCAGTACCTATAAACTGCGAGTGGCTTTGGCATCAGCAACATTATCTGAGCTTCAGGTTCGAGTTAATAATCCAAAGGCACCTCGTCCTCTATTTTCAAGTGGGTTGATAGGAAGGGATAACTCGATCGCTAGGCACGGAATTCATGGACTTTATTGGCTTTACAATGTAGACATACCAGGAACTCAACTAGTTGAAGGAGATAATACCATCTTTTTGACACAAACCAGAGGCAATGGTCCATTTCAGGCCATTATGTATGATTATATTCGTTTGGAAGGTCCACCATCGTCTAGCTTCAATAAGAAAAATTGA 1932 0.4249 MPSLGVQLTIQDNHVVMENGILKVTLSNPGGIVTGIQYNDIDNLLEVLNDESNRGYWDLVWSSPTSTGTSGTFDVIKGTTFKVMVENEDQVELSFSRTWDVSLEGKLVPLNIDKRFVMLRGSSGFYSYAIYEHLEEWPAFNLDETRIAFKLRKDKFHYMAMADNRQRNMPLPDDRLPPKGKALAYPEAVLLVNPIEPELKGEVDDKYQYSCDNKDSQVHGWICMDPAVGFWLITPSNEFRSGGPLKQNLTSHVGPTTLAVFLSAHYSGEDLVPKFNAGEAWKKVFGPVFIYLNSPYDGSDPLKLWEDAKLQMSVEVQSWPYSFPESEGFAKWDERGNVSGRLLVRERYINDDYISAKGAYVGLATPGDVGSWQRECKNYQFWAKADDDGYFSISNIRAGDYNVYAWVPGFIGDYKYDVVMNITEGCDIDLGDLVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYVNHPDKFRQYGLWERYAELYPDKDLIYTIGVSDYTKDWFFAQVTRKKDDNTYQGTTWQIKFQLDNVNKSSTYKLRVALASATLSELQVRVNNPKAPRPLFSSGLIGRDNSIARHGIHGLYWLYNVDIPGTQLVEGDNTIFLTQTRGNGPFQAIMYDYIRLEGPPSSSFNKKN 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01028 643 Pfam Polysaccharide lyase family 4, domain III 443 631 IPR029411 -
Pumo10g01028 643 Gene3D - 333 425 - -
Pumo10g01028 643 Pfam Rhamnogalacturonate lyase family 4 203 IPR010325 -
Pumo10g01028 643 CDD RGL4_C 445 632 - -
Pumo10g01028 643 SUPERFAMILY Galactose-binding domain-like 440 632 IPR008979 -
Pumo10g01028 643 Pfam Polysaccharide lyase family 4, domain II 357 429 IPR029413 -
Pumo10g01028 643 CDD RGL4_M 334 433 IPR029413 -
Pumo10g01028 643 Gene3D - 441 632 - -
Pumo10g01028 643 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 11 635 - -
Pumo10g01028 643 CDD RGL4_N 8 304 - -
Pumo10g01028 643 Gene3D - 5 305 IPR014718 GO:0030246
Pumo10g01028 643 FunFam Rhamnogalacturonate lyase B 331 430 - -
Pumo10g01028 643 SUPERFAMILY Galactose mutarotase-like 8 294 IPR011013 GO:0003824|GO:0005975|GO:0030246
Pumo10g01028 643 SUPERFAMILY Starch-binding domain-like 369 423 IPR013784 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01028 Pumo-Chr10 13313529 13318099 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01028 1 634 Polysaccharide Lyase AT1G09890 71.855 0.0 966
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01028 K18195 - gmx:100793563 1309.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01028 10 13313529 13318099 Pumo10g01028 10 13313529 13318099 ECH