Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01027 ATGTCCGGCCCAGGGGTACAGTTGCACATCCAAGATCACCATGTGGTGATGGATAATGGCATAGTCCAAGTTACGTTATCAAATCCAGATGGAATTGTCACTGGGATACGATATAATGGTATTGACAATTTGCTTGAAGTTCTCAACAAGGAGGCTAATAGAGGGTACTGGGACCTTGTTTGGAGTGCGCCAGGAAGCAAAGGAATGTTTGATGTGATTAAAGGAACGTGTTTTAAAGTTATAGTTCAAAATGAGGAACAGGTGGAGCTTTCATTCACAAGAATGTGGGATCCTTCTCTAGAGGGAAAGTCTGTCCCCTTAAATATTGACAAAAGATTCATAATGCTCCGTGGTTCATCAGGCTTCTACTCTTATGGAATTTATGAGCACTTAAATGGATGGCCAGATTTTGATATTGGTGAAACAAGGATCACTTTCAAGCTTAGAAAAGACAAGTTTCAATACATGGCTATGGCAGACAATAGGCAAAGGATTATGCCTTTTCCTGAAGATCGTTTACAAGGAAGATGCCAAACCTTGGGCTACCCAGAAGCTGTCCTGCTAGTCAATCCCAAGGATCCACGATTGAAAGGAGAGGTGGATGACAAGTATCAGTATTCATGTGTAAACATGGATAATCGAGTCCATGGGTGGATATCTTTCAGTCCACCAGTAGGATTCTGGCAGATCACACCTAGTGATGAGTTTCGTTCTGGTGGACCCCTCAAACAGAATTTGACCTCGCATGTAGGCCCCACCACACTTGCAATGTTTCTTAGTGGTCACTATGCGGGACAAGATTTGGTGCCTAAATTTAGAGGTGGTGAATCATGGAAGAAGGTTTTTGGTCCTGTATTTATATATCTTAATTCTTCTGGAGCAGTTGGTGACGACCCTCTTTGGCTATGGGAGGATGCAAAAATACAGATGATGAATGAAGTTCAAAGTTGGCCATATTCTTTCCCAGCTTCAGAGGACTTTTTAAAATCGGATCAACGGGGCAATGTTACTGGCAGATTACTTGTCTTAGACAGGTACGTCTGCACAGACTTAATATCAGCAAATGGTGCTTATGTTGGTTTAGCTCCACCTGGAGAAGCAGGTTCATGGCAAAGAGAATGCAAGGACTATCAATTCTGGACCAGAGCAGATGAGAATGGATTTTTTACTATTAGAAATGTACGCCCAGGCGACTATAACCTTTTTGCTTGGGTACCTGGTTTTGTTGGGGACTATAAATTTGGTGATTGGATGAAGATAACATCAGGTTCTTACATTGAATTGGGTGAACTTGTATATGAGCCTCCAAGGGATGGTCCCACATTGTGGGAAATAGGTATTCCAGATAGATCCGCTGCAGAATTTTATGCTCCTGACCCTAATCCACAACATATTAATAAGCTTTTTATCAACCATCCAGACAGGTTCAGGCAGTATGGATTGTGGGACAGGTATCCAGAATTGTATCCTGATGCAGATTTGGTTTACACAGTTGGTGTTAGTGACTATACGAAGGATTGGTTTTATGCACAGGCTCCGAGGAAAAAAGAGGATAACACTCTTCAAGGAACAACTTGGCAAATCAAGTTCGAAATCAGTAGTGTGGTTAAAGGAAGTACATACAAACTGAGAGTTGCAATTGCATCTGCAACATTAGCTGAATTGCAGATTCGAGTAAATGATCCCAATGCAAGGCGACCCCTATTTACCAGTGGATTAATAGGAAGGGACAACTCAATTGCAAGACATGGAATTCAAGGAATTTATTGGCTGTACCATGTGAATATACCAGGTTCTCTTCTTATTGATGGCACAAATACCATATATTTTACGCAACCAAGATGCACCAGTCCCTTCCAAGGTATCATGTATGATTATATTCGTTTGGAAGGCCCACCCTGTGAAGGAATTTAG 1914 0.4169 MSGPGVQLHIQDHHVVMDNGIVQVTLSNPDGIVTGIRYNGIDNLLEVLNKEANRGYWDLVWSAPGSKGMFDVIKGTCFKVIVQNEEQVELSFTRMWDPSLEGKSVPLNIDKRFIMLRGSSGFYSYGIYEHLNGWPDFDIGETRITFKLRKDKFQYMAMADNRQRIMPFPEDRLQGRCQTLGYPEAVLLVNPKDPRLKGEVDDKYQYSCVNMDNRVHGWISFSPPVGFWQITPSDEFRSGGPLKQNLTSHVGPTTLAMFLSGHYAGQDLVPKFRGGESWKKVFGPVFIYLNSSGAVGDDPLWLWEDAKIQMMNEVQSWPYSFPASEDFLKSDQRGNVTGRLLVLDRYVCTDLISANGAYVGLAPPGEAGSWQRECKDYQFWTRADENGFFTIRNVRPGDYNLFAWVPGFVGDYKFGDWMKITSGSYIELGELVYEPPRDGPTLWEIGIPDRSAAEFYAPDPNPQHINKLFINHPDRFRQYGLWDRYPELYPDADLVYTVGVSDYTKDWFYAQAPRKKEDNTLQGTTWQIKFEISSVVKGSTYKLRVAIASATLAELQIRVNDPNARRPLFTSGLIGRDNSIARHGIQGIYWLYHVNIPGSLLIDGTNTIYFTQPRCTSPFQGIMYDYIRLEGPPCEGI 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01027 637 CDD RGL4_M 332 431 IPR029413 -
Pumo10g01027 637 Pfam Polysaccharide lyase family 4, domain II 355 427 IPR029413 -
Pumo10g01027 637 Gene3D - 329 423 - -
Pumo10g01027 637 Gene3D - 439 630 - -
Pumo10g01027 637 SUPERFAMILY Galactose-binding domain-like 438 630 IPR008979 -
Pumo10g01027 637 Pfam Rhamnogalacturonate lyase family 9 200 IPR010325 -
Pumo10g01027 637 Gene3D - 6 306 IPR014718 GO:0030246
Pumo10g01027 637 CDD RGL4_N 14 298 - -
Pumo10g01027 637 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 11 633 - -
Pumo10g01027 637 SUPERFAMILY Starch-binding domain-like 331 424 IPR013784 GO:0030246
Pumo10g01027 637 SUPERFAMILY Galactose mutarotase-like 14 295 IPR011013 GO:0003824|GO:0005975|GO:0030246
Pumo10g01027 637 FunFam Rhamnogalacturonate lyase B 329 428 - -
Pumo10g01027 637 CDD RGL4_C 443 630 - -
Pumo10g01027 637 Pfam Polysaccharide lyase family 4, domain III 441 629 IPR029411 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01027 Pumo-Chr10 13305361 13311998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01027 1 633 Polysaccharide Lyase AT1G09910 71.248 0.0 957
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01027 K18195 - gmx:100814185 1289.25