Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01018 ATGGAGTTCTATGACCAGGATTTCTTGGAGGAATTAATGACTCTAAGAAGAGAAACATGGGACACCAATCCAAGCACAGAAGAAAACCAGTTCTTCTCTAATGGTTGGAGTTTTGACTGTTTTGATCAAAACTCTCTACCTTACCTCCCAAACTCTTCATGTGGTCAAGAAGTTCCTCAAAGTTACAACAACGACTACCCCTTCAATGAAATCTATGGCTCCTTACTTGATGAATCCTCACCACAGATTATGGATTCATACTATAGCACCCTTGATACTCCATTTCTTGGTCAAGAGGATCATCCATTGTCCATGATGGAAGAAGAGGAGCATGGTTTGCTTGGGGAAGAGCTTAAGAATTTGGAGCTGCAAACCACATGCAAAGTGGAGCCAACCCAATCCTCTGAAATGCCAGTTTTCAACATGGGAACGGGTCTGGAAAGAAAGAACCGATCAAAGAAGCTTCAGGGGCAACCCTCCAAGAATCTAATGGCGGAGAGGAGAAGAAGAAAGAGATTGAACGACCGTCTCTCAATGCTGAGAGCAATTGTCCCCAAGATTAGTAAGATGGATAGAACATCTATACTTGGAGACACTATTGATTACATGAAAGAACTTCTGGAGAAGATCAACAATCTGCAACAAGAAGTAGAAGTAGATTCAAACATGGCAGGCATTTTCAAAGATGTAAAGCCAAATGAAATCCTAGTGAGAAATTCACCCAAGTTTGAGGTGGAGAGGAGTGTGGACACCCGGGTGGAAATTTGCTGTGCAGGGAAGCCAGGCTTGTTACTATCTACAGTAAACACCCTGGAAGCATTAGGCCTAGAGATTCAACAATGTGTTATTAGCTGTTTCAATGATTTCACAATGCAGGCTTCTTGCTCAGAGGAATTGGAGCAAAGGACAATGCTGAGTTCTGAAGATATAAAGCAAGCGTTGTTTAGAAGTGCAGGATATGGAGGAAGAGTATGCTGGACTCGTCCGTGTGATTCTCAGGCAAAGTTGCCAATCATATATGTTCATGTGGATAGTGGATGTAATAATACAATTTATGGACGAGAGCCTTAG 1071 0.422 MEFYDQDFLEELMTLRRETWDTNPSTEENQFFSNGWSFDCFDQNSLPYLPNSSCGQEVPQSYNNDYPFNEIYGSLLDESSPQIMDSYYSTLDTPFLGQEDHPLSMMEEEEHGLLGEELKNLELQTTCKVEPTQSSEMPVFNMGTGLERKNRSKKLQGQPSKNLMAERRRRKRLNDRLSMLRAIVPKISKMDRTSILGDTIDYMKELLEKINNLQQEVEVDSNMAGIFKDVKPNEILVRNSPKFEVERSVDTRVEICCAGKPGLLLSTVNTLEALGLEIQQCVISCFNDFTMQASCSEELEQRTMLSSEDIKQALFRSAGYGGRVCWTRPCDSQAKLPIIYVHVDSGCNNTIYGREP 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01018 356 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 161 219 IPR036638 GO:0046983
Pumo10g01018 356 Coils Coil 196 223 - -
Pumo10g01018 356 CDD ACT_UUR-ACR-like 251 292 - -
Pumo10g01018 356 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 157 206 IPR011598 GO:0046983
Pumo10g01018 356 Pfam Helix-loop-helix DNA-binding domain 163 206 IPR011598 GO:0046983
Pumo10g01018 356 SMART finulus 163 212 IPR011598 GO:0046983
Pumo10g01018 356 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 63 320 - -
Pumo10g01018 356 Gene3D - 165 238 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01018 Pumo-Chr10 13225444 13227505 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01018 148 323 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 67.222 3.00e-71 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo10g01018 HLH 1.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01018 - - gmx:100812578 587.8