Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01015 ATGTCTCCGCCAGTGCTGAGCATAGGGGAGGAGGAGGGTAAAAGCAATGTCACTTTGTTGGTTTCTTCATCAACCACCATGGAGAGTGTGTGCCTCAAGAGCTTAGAATTTAAAGAACGCAACTACATGGGGTTATCTGATTGTTCTTCTGTGGACAGCTCGGTTCCGTCCTTCTCAGAAGAGAGTAAAAGTAATCTGAACCTGAAAGCCACTGAACTCAGGCTTGGGCTTCCAGGATCACAGTCTCCTGAAAGAGATTCTGATCTTTGCTTAAGAAGCTCAACTCAATTTGATGAAAAACCTTTGTTTCCTTTGTGTCCTTTGACTGATGATCACCATTCTTCAACCAAGACTGCTGTTTTGGGAAACAAAAGAGGGTTCTCAGATGCCATGAACGGCTTCTCCGAGGGGAAATTCCTAGTTGATTCGGAGGCTGCCAATCCGATACTATCTCCCAGGCCTGCTTCTAACTTGGGATTAAAAACTGGTTCTACACTTGAGAAGGTTGGGGCTCAGCAAACCAAAATGAAAGAAGTAGCAACAACAAAGGCCAATGAAACTAGACCAAGTATTGATGGTTCTGCAAATAATAATAACAGTGCACCAGCTACCAAGGCTCAGGTTGTGGGGTGGCCTCCTATAAGATCATTCAGGAAAAATTCATTGGCAACTAATTCAAAAAACAATGAAGAAGTTGATGGAAAAGTGGGGGTTGGTGCACTGTTCATCAAGGTCAGTATGGATGGTGCTCCCTATTTAAGGAAAGTAGACTTGAAGAATTACTCTACATATCCAGAATTATCTTCTGCTCTAGAAAAGATGTTCAGCTGTTTTACTATAAGTCAATGTGGATATCATGGAATTCTGGGCAGGGAGATGCTGAATGAAACCAAGCTGAAGGACCTTCTTCATGGATCAGAATATGTTCTTACATATGAGGACAAAGATGGTGATTGGATGCTTGTGGGTGATGTTCCCTGGGAGATGTTTATTGAAACATGCAAGAGGCTGAGGATCATGAAGAGTTCTGATGCCATTGGTCTAGCTCCCAGGGCTGTTGAAAAAAGTAAGAGCAGGACCTAG 1083 0.4312 MSPPVLSIGEEEGKSNVTLLVSSSTTMESVCLKSLEFKERNYMGLSDCSSVDSSVPSFSEESKSNLNLKATELRLGLPGSQSPERDSDLCLRSSTQFDEKPLFPLCPLTDDHHSSTKTAVLGNKRGFSDAMNGFSEGKFLVDSEAANPILSPRPASNLGLKTGSTLEKVGAQQTKMKEVATTKANETRPSIDGSANNNNSAPATKAQVVGWPPIRSFRKNSLATNSKNNEEVDGKVGVGALFIKVSMDGAPYLRKVDLKNYSTYPELSSALEKMFSCFTISQCGYHGILGREMLNETKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIETCKRLRIMKSSDAIGLAPRAVEKSKSRT 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01015 360 ProSiteProfiles PB1 domain profile. 240 342 IPR000270 GO:0005515
Pumo10g01015 360 FunFam Auxin-responsive protein 235 352 - -
Pumo10g01015 360 MobiDBLite consensus disorder prediction 168 205 - -
Pumo10g01015 360 MobiDBLite consensus disorder prediction 168 206 - -
Pumo10g01015 360 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 66 347 IPR003311 GO:0005634|GO:0006355
Pumo10g01015 360 Pfam AUX/IAA family 71 351 IPR033389 -
Pumo10g01015 360 SUPERFAMILY CAD & PB1 domains 240 341 - -
Pumo10g01015 360 Gene3D - 235 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01015 Pumo-Chr10 13167997 13173348 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01015 243 345 B3 DNA Binding Superfamily AT2G46530 34.951 3.80e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Pumo10g01015 AUX_IAA 9.3e-92 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01015 K14484 - gmx:100783314 630.943