Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01014 ATGGGTACTGGTTGGAGAAGAGCCTTCTGCACCCGCGACCCTGCATCTACCATATCGGATAAACAGCCTGGAAGCCCAAGCCCAAGCCCGAGTCCAAGAAGCTGCGCCCGGTTGGGTTTTCTCTCCGGAGGTAGCAACCCTTCCACCCCACGCTTGCGTTGCACAACAATAGCGGAAACTGCTTCTCAAGTAAATGAAAGCCCCAGAGTTCAAAGCAAGAAGACCCCCAGAGCAAGCAAGTCACCAAAAACGCTATCTGTCTCAAATCCAACTTCTCCGCGCTCTCCTCTCAAGCTCTCCCTCTTCAAGAACAGCTTCAAATTCAGGAGTAGCTGTGGAATTTGCTTGAACAGCGTGAAGACGGGACAGGGTACGGCGATTTACACTGCGGAATGTGGTCACGCGTTTCATTTCCCGTGCATCGCAGCGCATGTACGCAAACACGGCAGCCTGGTGTGCCCCGTCTGCAACGCCACGTGGAAAGACGTGCCTCTACTCGCGGCGCACAAGAACCTCGCGCCAGAATCCGCCACGCAAAACGACGTCGTCCAGAGGATCGCAGAAAACCCCAATGCCAGCGACAAAAAGCCAACAGAGAACACCACCTCCCCCGTTTTCAAAACCTACAACCACGTGGAGCCACCACCGAAGCACTCCGAATCACTCAGGTCCTACGACGACGATGAACCGCTCCTCTCTCCCACCTCCGGCGGTCGGATTATTCCCATTCCCGAAGCCGACGAGAATGCCGAAGATGACGAGGATGAAGACGCCGGCGAGTTCCAGGGCTTTTTCGTCAATCCGAAGAACTCGTCCTTGTCAAGATCATACTCCGATTCGTTGCAAACAAGTGACGGAGATGCCAGAACTGTTCAGGTGAAACTGATGTCGGAGTGTGCGGTTATCTCAGCTTCTAGAACGCACGAGACCTACGCTTTGGTGCTAAAAGTTAAGGCTCCACCGCCGCCAGCTCCACCGCGAAGCAGCGCAGCGCCGTCACAGCGCGCTCCGATAGATCTGGTTACCGTGCTCGACGTTGGTGGAAGCATGACCGGCGCGAAGCTTCACATGCTAAAGCGCGCGATGCGTTTGGTTATCTCATCCCTTGGCCCCGCTGACAGGCTCTCCATCGTGGCTTTCTCGGCCACCTGCAAACGGCTCTTACCTCTGCGAAGAATGACAAGTCAAGGTCAGCGGGTGGCTCGGCGCATCGTTGACCGGCTCGTGATAGGTCAAGGCTCCAGCGTGGGCGATGCGTTGAGAAAAGCCACCAGGGTATTAGAAGATCGCAGAGAAAGAAACCCGGTGGCGAGCGTGATGCTCTTATCAGACGGTCAGGAAGAGAGGGTTCAAAATCAGAGGGGAGGTAATAATAATCAGCGGAAGACGTCGAGCCACGTGTCGTCGACGCGGTTCGCTCATATCGAGATTCCGGTTCACGCGTTTGGGTTCGGGGCGAAGAGCGGTTACAGCCAGGAACCGGGGGAGGACTCGTTCGCGAATGGAAGGCCCACGCTGCTGAGCTCAGGGGCGGTGCGGCTGGGCGATTTGTACGCCGAGGAAGAGAGGGAGCTGTTAGTTGAGTTGCGAGTTCCAGCGTCGTCAGGAGCTGGGGCCCACCACGTGATGACGGTACGGTGCCTCTATAAAGACCCTGCTAGCCAGGAGATCGTATACGGAAGGGAACAGGGTCTTCTGGTGCCGCCGCCCCAGAGTGTGCGTTGTTCCGGTACAAGGATTCAGAGGCTCAGGAATCTCTTCATAACAACCCGAGCCATTGCAGAGTCTAGGAGGCTAGTTGAGCACAACGCTGACTTCACCAGCGCTCATCATTTGCTTGCCTCGGCGCGTGCACTTATCATTCAGTCTAATTCGGCTTCGGCTGAGGAATATGTGCGCGGCTTGGAGGCTGAGCTGGCAGAGCTTCATTGGCGGAGACAGCATGACCAGATGCAGCTTCAGCTTCAGCAGCAGCAGCAAATGATGCAACAGAGGAGAAGAGGGAGTGAGAGAGACCTGATGACGACGCTGGTGGACGAGAATGGCGAGCCGCTTACGCCGACGTCGGCTTGGAGAGCCGCCGAGAAGCTGGCTAAGATGGCAATGATGAAGAAGTCTTTGAATAGAGTCAGCGACTTGCACGGCTTCGAAAACGCTAGGTTTTAA 2166 0.56 MGTGWRRAFCTRDPASTISDKQPGSPSPSPSPRSCARLGFLSGGSNPSTPRLRCTTIAETASQVNESPRVQSKKTPRASKSPKTLSVSNPTSPRSPLKLSLFKNSFKFRSSCGICLNSVKTGQGTAIYTAECGHAFHFPCIAAHVRKHGSLVCPVCNATWKDVPLLAAHKNLAPESATQNDVVQRIAENPNASDKKPTENTTSPVFKTYNHVEPPPKHSESLRSYDDDEPLLSPTSGGRIIPIPEADENAEDDEDEDAGEFQGFFVNPKNSSLSRSYSDSLQTSDGDARTVQVKLMSECAVISASRTHETYALVLKVKAPPPPAPPRSSAAPSQRAPIDLVTVLDVGGSMTGAKLHMLKRAMRLVISSLGPADRLSIVAFSATCKRLLPLRRMTSQGQRVARRIVDRLVIGQGSSVGDALRKATRVLEDRRERNPVASVMLLSDGQEERVQNQRGGNNNQRKTSSHVSSTRFAHIEIPVHAFGFGAKSGYSQEPGEDSFANGRPTLLSSGAVRLGDLYAEEERELLVELRVPASSGAGAHHVMTVRCLYKDPASQEIVYGREQGLLVPPPQSVRCSGTRIQRLRNLFITTRAIAESRRLVEHNADFTSAHHLLASARALIIQSNSASAEEYVRGLEAELAELHWRRQHDQMQLQLQQQQQMMQQRRRGSERDLMTTLVDENGEPLTPTSAWRAAEKLAKMAMMKKSLNRVSDLHGFENARF 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01014 721 MobiDBLite consensus disorder prediction 188 208 - -
Pumo10g01014 721 MobiDBLite consensus disorder prediction 41 94 - -
Pumo10g01014 721 CDD RING-H2_WAVH2 109 162 - -
Pumo10g01014 721 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 110 716 - -
Pumo10g01014 721 MobiDBLite consensus disorder prediction 188 285 - -
Pumo10g01014 721 Pfam von Willebrand factor type A domain 340 446 IPR002035 -
Pumo10g01014 721 SUPERFAMILY RING/U-box 106 162 - -
Pumo10g01014 721 Gene3D von Willebrand factor, type A domain 339 502 IPR036465 -
Pumo10g01014 721 ProSiteProfiles VWFA domain profile. 339 529 IPR002035 -
Pumo10g01014 721 MobiDBLite consensus disorder prediction 213 227 - -
Pumo10g01014 721 MobiDBLite consensus disorder prediction 445 467 - -
Pumo10g01014 721 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 221 IPR013083 -
Pumo10g01014 721 SMART VWA_4 337 523 IPR002035 -
Pumo10g01014 721 SMART ring_2 112 156 IPR001841 -
Pumo10g01014 721 Pfam RING-like zinc finger 112 141 IPR001841 -
Pumo10g01014 721 SUPERFAMILY vWA-like 337 487 IPR036465 -
Pumo10g01014 721 MobiDBLite consensus disorder prediction 443 467 - -
Pumo10g01014 721 ProSiteProfiles Zinc finger RING-type profile. 112 157 IPR001841 -
Pumo10g01014 721 MobiDBLite consensus disorder prediction 1 94 - -
Pumo10g01014 721 MobiDBLite consensus disorder prediction 265 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01014 Pumo-Chr10 13141961 13144339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01014 112 162 C3H Transcription Factor Family AT1G74410 41.176 9.67e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01014 - - gmx:100782780 1130.16