Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01006 ATGGCGAATCACGAAACTCAACACCACCGCCCCCGCCAAAACCGCCGGTCCAAGGCTCGACCGGCGGCCCCGGCTAGGGTTCCGCTGAGGCTGTTGCTGAAGGTAGCGTCGGTTGCCGGTGGCATTCAGTTCGGGTGGGCCCTGCAGCTCTCTCTTCTCACGCCGTACGTGCAGCAGCTCGGGATCCCGCACGTGTGGGCCAGCATCATATGGCTGTGTGGGCCGCTATCCGGGCTCCTGGTCCAGCCCCTCGTGGGCCACATGAGCGACCGCTGCACCAGCCGGTTCGGGCGCCGAAGACCGTTTATTTTGGGCGGAGCATTGTCGATCGTGGTCGCTGTTCTGATCATCGGACACTCCGCCGACATCGGGTGGTGGTTCGGCGACACCCATGAGCATCGCCCCTGGGCTGTGGGCGTTTTTGTTTTCGGGTTTTGGATTTTGGACGTCGCTAACAACGTCACTCAGGGCCCTTGCAGAGCTTTGCTTGGTGATCTCACAGGCAAGGATCATCGAAGGACACGTGTTGCAAATGCTTATTTCTCCCTGTTTATGGCTATTGGTAATATTCTTGGATATGCAACTGGATCATACAGTGGTTGGTACAAGGTCTTTGCTTTCACACTTACCCCTGCATGCAATATTAGTTGTGCAAATCTCAAGTCTGCTTTCTTTCTCGACATTGTTTTCATTGCTGTCACCACATATATAAGCATCATGGCAGCTCAAGAAGTGCCTTTAAGTTCAAGTGGAGCACACCCTGTTGGAGAAGCAGCAGCAGGGGAATCAGGTGCTGCAGGAGAAGCTTTCCTGTGGGAGCTATTTGGGACATTCAGATATTTTTCGACCCCTGTATGGACAATACTGTCTGTTACTGCTCTAACATGGATTGGGTGGTTTCCATTTCTCCTATTTGATACTGATTGGATGGGCCGAGAGATTTATGGTGGTGAGCCAAATGAAGGCCCTAATTATGATGCTGGAGTTAGAATGGGGGCACTTGGCTTATTGCTTAATTCAGTTGTTCTTGGAATAACGTCAGTACTCATGGAGAGGCTATGCAGGAAGCGGGGACCTGGGTTTGTGTGGGGAATTTCAAATATCCTAATGGCTGTCTGCTTTGTTGCAATGCTTGTTGTAACCTATATGGCAAATAACATTGGCTATGTAGGCAAAGATCTACCACCAACTAGCATTGTGATAGCTGCATTGACAATCTTTACCGTTCTTGGGTTTCCTCTTGCAATCACTTACAGCGTTCCATATGCCTTAATTTCCACACATATTCAGTCATTGGGGCTTGGCCAAGGATTGTCAATGGGAGTCCTAAATCTTGCAATAGTGTTCCCACAGATGGTGGTGTCCCTGGGAAGTGGACCATGGGATCAGCTATTTGGTGGAGGAAACTCTCCAGCATTTGGTGTGGCAGCTGTTGCAGCCCTTGTCAGTGGATTCATAGCTGTCTTGTTTATTCCCCGATCTGGTGGTCAAAAGCCTAGAAGCCAAGTCATAGCAGAAATGAAGGCCTTGGGGAAGATATCAGGCCCAACAGCCCTGACGGGGTTAATATTATATTCGAGAGCCATGATCTCCATGCTCTTCCTGGGCTACCTCGGCGAGATGGAGCTGGCGGGTGGGTCCCTGTCGATCGGGTTCGCGAACATCACCGGCTACTCCGTGATCTCCGGTCTGGCCATGGGAATGGAACCCATTTGCGGCCAAGCCTACGGAGCCAAACAGTTCAAGACCCTTGGGCTAACCCTCCAGAGAACCGTCCTCCTCCTCCTCTCAACCTCCCTACCCATCTCCCTCACGTGGCTCAACATGAAGAACATCCTCTTATGGTGCGGCCAGGACCACCAAATCTCCTCCACCGCGCAGACCTTCATCATCTTCTCCATCCCGGACCTCTTCCTCCTCTCCCTCCTCCACCCTCTCCGAATCTACCTCCGAACACAAAGCATCACATTACCCCTAACCTACTGCTCCGCCGTCTCCGTCCTCCTCCACGTCCCCCTCAACTTCCTCCTAGTGGTCCACTTCAAAATGGGAGTCTCCGGCGTGGCAATCGCAATGGTCTGGACAAACCTCAACCTCGTCCTCTTCCTCTCTTCCTTCATTTACTTCTCGGGAGTCTACAAGGACTCGTGGGTTCCCCCGAGCAACGACTGCCTCAGGGGATGGTCCTCCCTACTTGCACTTGCGGTTCCAACCTGCGTCTCCGTTTGTCTCGAGTGGTGGTGGTACGAACTCATGATAATCCTCTGCGGACTCTTGCTCAACCCCAAGGCCACCATTGCTTCCATGGGAATCCTCATCCAAACCACTTCATTGGTCTACGTCTTCCCTTCCTCTCTCAGCCTCGGCGTCTCCACCCGAGTGGGGAACGAGTTAGGCGCCAACCGCCCCGCCAAAGCCCGCATTTCCATGATAGTCTCACTCGCCTGTGCCGCGGCCTTAGGCGTCACCGCCATGCTCTTCACCACGCTAATGAGACACCAGTGGGGGAGATTCTTCACCTCTGACCATGAAATCCTCCACCTTACGTCCCTCGCTCTGCCCATTGTCGGCCTCTGCGAGCTCGGCAACTGCCCGCAGACCACCGGCTGCGGCGTCCTCAGAGGCAGCGCCAGGCCCACCATCGGAGCCAACATCAATTTGGGCTCCTTTTATTTGGTGGGCATGCCTGTCGCGGTTCTTCTCGGGTTTGTCTGGAAAATGGGCTTTCCTGGCCTCTGGCTTGGGTTGCTTGCGGCCCAAGCCTCTTGTGCTGCTCTCATGATATTCGTACTCTGCACCACTGACTGGAATGCGCAAGTGCAAAGGGCCAACGAGCTTACTAATGCTAATTCTGCTCCTACCAAATTACCTACTACTACTACTACGTTCACCCGAACAACAACAGAGTGTAACAATAACAATGTTTGTCTTCCAGAGATTGTTGTCGATCATGATGATGAGCTTGCCAAGACACCTTCTCTTGAAACAGACCCTCTCATTATACACACCATAGATTAA 3018 0.5285 MANHETQHHRPRQNRRSKARPAAPARVPLRLLLKVASVAGGIQFGWALQLSLLTPYVQQLGIPHVWASIIWLCGPLSGLLVQPLVGHMSDRCTSRFGRRRPFILGGALSIVVAVLIIGHSADIGWWFGDTHEHRPWAVGVFVFGFWILDVANNVTQGPCRALLGDLTGKDHRRTRVANAYFSLFMAIGNILGYATGSYSGWYKVFAFTLTPACNISCANLKSAFFLDIVFIAVTTYISIMAAQEVPLSSSGAHPVGEAAAGESGAAGEAFLWELFGTFRYFSTPVWTILSVTALTWIGWFPFLLFDTDWMGREIYGGEPNEGPNYDAGVRMGALGLLLNSVVLGITSVLMERLCRKRGPGFVWGISNILMAVCFVAMLVVTYMANNIGYVGKDLPPTSIVIAALTIFTVLGFPLAITYSVPYALISTHIQSLGLGQGLSMGVLNLAIVFPQMVVSLGSGPWDQLFGGGNSPAFGVAAVAALVSGFIAVLFIPRSGGQKPRSQVIAEMKALGKISGPTALTGLILYSRAMISMLFLGYLGEMELAGGSLSIGFANITGYSVISGLAMGMEPICGQAYGAKQFKTLGLTLQRTVLLLLSTSLPISLTWLNMKNILLWCGQDHQISSTAQTFIIFSIPDLFLLSLLHPLRIYLRTQSITLPLTYCSAVSVLLHVPLNFLLVVHFKMGVSGVAIAMVWTNLNLVLFLSSFIYFSGVYKDSWVPPSNDCLRGWSSLLALAVPTCVSVCLEWWWYELMIILCGLLLNPKATIASMGILIQTTSLVYVFPSSLSLGVSTRVGNELGANRPAKARISMIVSLACAAALGVTAMLFTTLMRHQWGRFFTSDHEILHLTSLALPIVGLCELGNCPQTTGCGVLRGSARPTIGANINLGSFYLVGMPVAVLLGFVWKMGFPGLWLGLLAAQASCAALMIFVLCTTDWNAQVQRANELTNANSAPTKLPTTTTTFTRTTTECNNNNVCLPEIVVDHDDELAKTPSLETDPLIIHTID 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01006 1005 Gene3D MFS general substrate transporter like domains 30 482 IPR036259 -
Pumo10g01006 1005 FunFam Sucrose transport protein 26 491 - -
Pumo10g01006 1005 NCBIfam sucrose/proton symporter 27 494 IPR005989 GO:0005886|GO:0008515|GO:0015770
Pumo10g01006 1005 MobiDBLite consensus disorder prediction 1 22 - -
Pumo10g01006 1005 SUPERFAMILY MFS general substrate transporter 32 496 IPR036259 -
Pumo10g01006 1005 Pfam MatE 737 899 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Pumo10g01006 1005 Pfam MatE 516 676 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Pumo10g01006 1005 CDD MFS_SLC45_SUC 32 489 - -
Pumo10g01006 1005 NCBIfam MATE family efflux transporter 518 913 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Pumo10g01006 1005 CDD MATE_eukaryotic 506 942 IPR045069 GO:0042910|GO:1990961
Pumo10g01006 1005 PANTHER SUGAR TRANSPORTER 28 490 - -
Pumo10g01006 1005 Pfam MFS/sugar transport protein 47 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01006 Pumo-Chr10 13030199 13042992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01006 3 499 Sucrose Transporter Gene Family AT1G09960 67.126 0.0 684
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01006 - - gmx:100787939 931.784