Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01004 ATGCTGCTCGTGCTTCAGAACAACCTCTCCGGCGAGATTCCGGCCACCTACGGTGACTGTTTGACTCTGCAACGATTCAGAGTCAGCAACAACTCGCTCTCCGGCGCCGTCCCTCCCGCAATTTGGGGATTGCCAAACGCGGAAATAATCGATATTGAGCTGAATCAGTTGGAAGGTTCGATTAGTTCGGATATCCAAAACGCGAAAACAGTGGCTTCAATATTCGCCAGGCAGAACCGGTTGTCCGGTGAAATACCAGAGGAAATCTCAAAAGCGACGTCGTTGGGGACTGTGGACCTGAGCGAGAATCAAATATCGGGGAACATTCCAGAAGGAATCGGCGAGCTTAAACAACTAGGTAGCCTTCATTTACATAGCAACAAGTTATCAGGTTCGATACCGGAATCTCTAGGTTCCTGTAAATCCCTCAACGACGTTGACCTATCGCGAAATTCACTCACTGGAGAAATCCCTTCCTCGTTGGGCTCTTTCCCTGCTCTTAATTCTCTGAATCTTTCAGAGAACAAACTCTCCGGTGAAATCCCCAAGAGTTTAGCGTTCCTCAGATTGAGCCTATTCGATTTATCCAATAACCGGTTAACCGGTCCAATTCCACAGGCTCTAACCCTCGAAGCTTACAATGGAAGCCTCTCCGGAAACCCTGGTTTGTGCAGCGTCGACGCGATTAACTCGTTCCCGCGTTGCCCTGCTTCCTCTGGCATGTCGAAGGACATGCGCGCGCTCATAATTTGCTTCGCGGTGGCGTCGATACTGTTGCTCTCGTGTTTGGGCGTTTACTTGCAGCTGAAGAGGAGGAAGGAGGAGGGGAAGAAATACGGAGAACAACGTTCGCTGAAGGAAGAATCGTGGGACGTGAAATCGTTCCACGTGTTAAGTTTCTCAGAGGGGGAGATTCTAGATTCCATCAAGCAGGAGAATCTCATAGGAAAAGGAGGCTCAGGGAACGTGTATAGAGTCACGCTTTCCAATGGGAAAGAACTGGCGGTGAAGCATATATGGAACACCGATGTCCCCGCGCGGAGAAAGTCGTGGAGCAGCACTCCCATGCTTGGGAACAATAAGCGCGGTGGGAAGTCAAAGGAGTTTGACGCGGAGGTTCAGGCTTTGAGCTCCATAAGGCACGTGAATGTTGTGAAGCTTTATAGCAGCATAACGAGCGAGGATTCGAGCTTGTTGGTGTACGAGTATTTGCCTAATGGGAGTTTGTGGGACCGGCTTCACACGAGTAGGAAGATGGAGCTTGATTGGGAAACGAGGTATGAAATCGCGGTTGGTGCAGCGAAAGGGTTGGAGTATTTGCATCATGGGTGCGAGAGGCCGGTTATTCATAGAGATGTTAAGTCCAGTAATATCTTGTTGGACGAGTTTTTGAAACCTAGGATTGCGGATTTTGGACTTGCTAAGGTTGTCCAAGCCAACGTTGGCAAGGATTCTTCCACTCATGTCATTGCCGGAACCCACGGCTACATTGCTCCTGAATATGGCTACACATACAAAGTGAATGAGAAGAGTGATGTGTACAGCTTTGGAGTGGTCTTGATGGAGTTGGTAACTGGGAAAAGGCCAATTGAGCCAGAATTTGGGGAAAATAAGGACATAGTGAGTTGGGTCCATAACAAGGCACGGAGCAAAGAGGGGCTTAGGAGTGCGGTGGATTCGAGAATTCCGGAGATGTATACAGAGGAAGCTTGCAAGGTGTTGAGAACAGCAGTGCTGTGCACGGGAACTCTTCCAGCTTTGAGACCCACCATGAGAGCTGTGGTTCAAAAACTTGAGGATGCTGAGCCTTGTAAATTGGTTGGGATTCTTATTAGCAAACATGGTAGTGAAAAGAAAATAGGAGTCAACGACAAGTAA 1878 0.4878 MLLVLQNNLSGEIPATYGDCLTLQRFRVSNNSLSGAVPPAIWGLPNAEIIDIELNQLEGSISSDIQNAKTVASIFARQNRLSGEIPEEISKATSLGTVDLSENQISGNIPEGIGELKQLGSLHLHSNKLSGSIPESLGSCKSLNDVDLSRNSLTGEIPSSLGSFPALNSLNLSENKLSGEIPKSLAFLRLSLFDLSNNRLTGPIPQALTLEAYNGSLSGNPGLCSVDAINSFPRCPASSGMSKDMRALIICFAVASILLLSCLGVYLQLKRRKEEGKKYGEQRSLKEESWDVKSFHVLSFSEGEILDSIKQENLIGKGGSGNVYRVTLSNGKELAVKHIWNTDVPARRKSWSSTPMLGNNKRGGKSKEFDAEVQALSSIRHVNVVKLYSSITSEDSSLLVYEYLPNGSLWDRLHTSRKMELDWETRYEIAVGAAKGLEYLHHGCERPVIHRDVKSSNILLDEFLKPRIADFGLAKVVQANVGKDSSTHVIAGTHGYIAPEYGYTYKVNEKSDVYSFGVVLMELVTGKRPIEPEFGENKDIVSWVHNKARSKEGLRSAVDSRIPEMYTEEACKVLRTAVLCTGTLPALRPTMRAVVQKLEDAEPCKLVGILISKHGSEKKIGVNDK 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01004 625 ProSitePatterns Protein kinases ATP-binding region signature. 315 337 IPR017441 GO:0005524
Pumo10g01004 625 SUPERFAMILY L domain-like 6 227 - -
Pumo10g01004 625 SMART serkin_6 309 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g01004 625 FunFam Leucine-rich repeat receptor protein kinase EMS1 37 134 - -
Pumo10g01004 625 SUPERFAMILY Protein kinase-like (PK-like) 299 598 IPR011009 -
Pumo10g01004 625 ProSiteProfiles Protein kinase domain profile. 309 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g01004 625 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 2 599 - -
Pumo10g01004 625 Gene3D Phosphorylase Kinase; domain 1 292 403 - -
Pumo10g01004 625 FunFam Leucine-rich repeat receptor protein kinase EMS1 135 217 - -
Pumo10g01004 625 Gene3D Ribonuclease Inhibitor 2 235 IPR032675 -
Pumo10g01004 625 FunFam Receptor-like protein kinase HAIKU2 292 403 - -
Pumo10g01004 625 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 404 610 - -
Pumo10g01004 625 Pfam Protein kinase domain 311 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g01004 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 448 460 IPR008271 GO:0004672|GO:0006468
Pumo10g01004 625 Gene3D Transferase(Phosphotransferase) domain 1 404 606 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01004 Pumo-Chr10 12987572 12991326 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01004 2 618 Receptor kinase-like Gene Family AT1G09970 61.874 0.0 744
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pumo10g01004 Pkinase 1.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01004 - - gmx:100779554 1139.41