Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01002 ATGTCAGTCTTCAACCTCACCAACCTCGAGGAGCTAAACTTCAACGAAAACGGAGGCTTCAACCTGTGGCAGCTACCATCAGATATCGACAGGTTGAAACACCTCAAGGTTGTGGTGCTCACAACGTGCATGGTGCATGGCCAAATCCCTGCGTCCATAGGGAACATAACTTCCCTCATCGATCTTGAGCTCAGTGGGAACTTCCTCACGGGACAAATTCCCAAAGAGCTTGGTCAGCTGAAGAACCTGCAGCAACTTGAGCTTTACTATAACTACCATCTCGTTGGGAACATTCCAGAGGAGTTGGGGAACCTCACGGAGCTCGTGGATTTGGACATGTCGGTGAACAAGTTCACTGGGAGCATCCCCGCGTCGGTGTGTAAACTTCCAAAGCTTCAAGTCCTGCAGCTCTACAACAACAGCCTCACTGGAGAAATCCCAGGTGCGATTGAAAACTCAACAGCTTTGAGAATGTTGTCTCTCTACGACAACTTCCTCCTAGGACATGTTCCCACGAAACTGGGACAGTTCTCCAGAATGTTAGTTTTTGACTTGTCCGAGAACAAATTGTCTGGTCCGTTGCCAACCGAGGTTTGCAAGGGAGGTACGCTCGAGTACTTTCTCGTTCTGGATAACATGTTTTCCGGTGAGATTCCTCAGAGTTATGCTAACTGCATGATGCTGTTGAGGTTTAGAGTGAGCAACAACCGTTTGGAGGGGTCCGTTCCCGCGGAACTCCTCGGTTTGCCACACGTTTCAATCATTGATTTGAGTAACAATAACTTGACCGGTCCGATTCCTGAGATTAGCGGAAATTCTAGAAACCTGTCTGAACTGTTCCTGCAGAGGAACAAGATTTCAGGTGTCATAAATCCCACGATATCTCGAGCCATTAATTTGGTCAAGATTGATTTCAGCTATAACCTTTTGTCGGGTCCAATACCCTCCGAAATTGGCAACCTGAGAAAGCTTAATTTGCTTATGTTGCAAGGGAACAAGCTGAATTCTTCCATCCCCGGTTCACTCTCTTCATTGGAGTCTCTCAACCTTCTTGATCTCTCCAACAATCTTTTAACTGGGAGCATCCCTGAAAGCCTCTCTGTGCTGCTACCAAACTCTATTAACTTCTCACAGAACCTTCTTTCGGGTCCAATTCCTCCCAAACTGATCAAAGGGGGGTTGGTGGAAAGCTTTGCAGGGAATCCTGGTTTGTGTGTGTTACCGGTGTATGCTAATTCATCGGATAAAAACTTCCCCATATGTGCTGCAAGTCCCTACAAGAGTAAGAGGATAAACACCATCTGGATAGCTGGGGTGTCAGTGGTTTTGATCTTTATTGGCTCTGCCTTGTTTCTCAAACGTAGGTGCAGCAAAGACACTGCTGCAGTGGAACATGAGGACACACTGTCTTCTTCGTTCTTCTCTTATGACGTTAAGAGCTTCCACAAGATCTCTTTCGACCAAAGGGAGATCGTTGAGTCCTTGGTGGACAAGAACATAATGGGGCATGGAGGGTCTGGGACAGTGTACAAGATTGAGTTGAAAAGTGGTGATATTGTTGCAGTGAAGAGGCTGTGGAGTCACGCGTCCAAGGATTCGGCTCCAGAGGATCGGTTATTTGTGGACAAGGCAATGAAAGCAGAGGTGGAGACCCTGGGAAGCATAAGACACAAGAACATAGTGAAACTTTACTGCTGCTTCTCCAGTTATGACTGCAGCTTGTTGGTTTATGAGTACATGCCAAATGGTAATCTTTGGGATTCCCTGCACAAAGGTTGGATCCTCTTGGATTGGCCTACTCGTTATAGAATTGCACTGGGGATTGCACAGGGTTTGGCATACCTCCACCATGATTTGCTTCTTCCTATTATCCACCGAGATATCAAGTCAACTAATATCCTGTTGGATGTTGATTACCAGCCCAAGGTTGCTGACTTTGGGATTGCCAAGGTTTTGCAAGCAAGAGGAGGCAAGGATTCCACTACAACTGTTATTGCAGGAACATATGGTTACTTAGCTCCAGAATTTGCATATTCGTCAAGGGCCACCACCAAGTGCGATGTCTACAGTTTTGGGGTGATTTTGATGGAACTTTTAACTGGGAAGAAGCCAGTTGAGGCAGAATTTGGAGAGAACAGAAACATTGTTTTCTGGGTTTCCAACAAAGTAGAAGGCAAGGAAGGGGCTAGACCAAGTGAGGTATTAGATCCAAGGTTATCATGTTCATTCAAGGATGACATGATCAAAGTGTTGCGGATTGCCATTCGCTGCACCTACAAAGCCCCAACAAGTAGACCAACCATGAAAGAGGTTGTTCAGCTTCTGATTAAGGCAGAGCCACGCAGTTCCGATTCTTGCAAGTTGTCAACCAAAGATGTATCAAATGTCACAGTAATAAAGAAACCATATGATATATAA 2418 0.4586 MSVFNLTNLEELNFNENGGFNLWQLPSDIDRLKHLKVVVLTTCMVHGQIPASIGNITSLIDLELSGNFLTGQIPKELGQLKNLQQLELYYNYHLVGNIPEELGNLTELVDLDMSVNKFTGSIPASVCKLPKLQVLQLYNNSLTGEIPGAIENSTALRMLSLYDNFLLGHVPTKLGQFSRMLVFDLSENKLSGPLPTEVCKGGTLEYFLVLDNMFSGEIPQSYANCMMLLRFRVSNNRLEGSVPAELLGLPHVSIIDLSNNNLTGPIPEISGNSRNLSELFLQRNKISGVINPTISRAINLVKIDFSYNLLSGPIPSEIGNLRKLNLLMLQGNKLNSSIPGSLSSLESLNLLDLSNNLLTGSIPESLSVLLPNSINFSQNLLSGPIPPKLIKGGLVESFAGNPGLCVLPVYANSSDKNFPICAASPYKSKRINTIWIAGVSVVLIFIGSALFLKRRCSKDTAAVEHEDTLSSSFFSYDVKSFHKISFDQREIVESLVDKNIMGHGGSGTVYKIELKSGDIVAVKRLWSHASKDSAPEDRLFVDKAMKAEVETLGSIRHKNIVKLYCCFSSYDCSLLVYEYMPNGNLWDSLHKGWILLDWPTRYRIALGIAQGLAYLHHDLLLPIIHRDIKSTNILLDVDYQPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEFAYSSRATTKCDVYSFGVILMELLTGKKPVEAEFGENRNIVFWVSNKVEGKEGARPSEVLDPRLSCSFKDDMIKVLRIAIRCTYKAPTSRPTMKEVVQLLIKAEPRSSDSCKLSTKDVSNVTVIKKPYDI 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01002 805 FunFam Leucine-rich repeat receptor-like protein kinase 22 125 - -
Pumo10g01002 805 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 580 793 - -
Pumo10g01002 805 FunFam receptor protein-tyrosine kinase CEPR1 478 579 - -
Pumo10g01002 805 Gene3D Transferase(Phosphotransferase) domain 1 580 800 - -
Pumo10g01002 805 SUPERFAMILY L domain-like 171 402 - -
Pumo10g01002 805 ProSiteProfiles Protein kinase domain profile. 495 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g01002 805 ProSitePatterns Serine/Threonine protein kinases active-site signature. 623 635 IPR008271 GO:0004672|GO:0006468
Pumo10g01002 805 SMART LRR_typ_2 56 80 IPR003591 -
Pumo10g01002 805 SMART LRR_typ_2 129 153 IPR003591 -
Pumo10g01002 805 SMART LRR_typ_2 6 32 IPR003591 -
Pumo10g01002 805 SMART LRR_typ_2 345 369 IPR003591 -
Pumo10g01002 805 SMART LRR_typ_2 249 272 IPR003591 -
Pumo10g01002 805 SMART LRR_typ_2 321 344 IPR003591 -
Pumo10g01002 805 FunFam Receptor protein-tyrosine kinase CEPR1 129 415 - -
Pumo10g01002 805 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 93 776 - -
Pumo10g01002 805 SUPERFAMILY Protein kinase-like (PK-like) 482 775 IPR011009 -
Pumo10g01002 805 Gene3D Ribonuclease Inhibitor 128 416 IPR032675 -
Pumo10g01002 805 Pfam Protein kinase domain 497 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g01002 805 SMART serkin_6 495 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g01002 805 Gene3D Ribonuclease Inhibitor 1 127 IPR032675 -
Pumo10g01002 805 Gene3D Phosphorylase Kinase; domain 1 478 579 - -
Pumo10g01002 805 SUPERFAMILY L domain-like 4 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01002 Pumo-Chr10 12967899 12971914 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01002 1 781 Receptor kinase-like Gene Family AT5G49660 67.391 0.0 1075
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pumo10g01002 Pkinase 1.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01002 - - gmx:100785822 1498.41