Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00964 ATGGCCAAAGGATCTTCAACGTCTTCAAAGACAAAATCCATGAAATTTATATGCCTCTTCATTTTCATTCTCAACTTATTCCACTTATCCCATGGAGATCAACAAGAGGTTGAGCTTCTCTTATCCTTTAAAGCTTCCCTCCACGACCCACTTCATGTTCTCTCCAACTGGGTCAGTTTCACTTCCTCTGCCACTATCTGCAAGTGGCACGGCATCACCTGCGACAACAACGTTAACTCTTCCCACGTTAACGCTGTGGTGCTCTCAGGAAAAAACATAACCGGTGAGGTATCCTCTTCCATTTTTCAACTTCCCTACGTCACAAACCTCGACCTTTCCAATAATCAGTTTGTTGGGGAAATCACTTTTAACTACTCTCTAAATTCTCTGTCTCCAATCCGTTACCTTAACCTCAGCAACAACAACCTCACGGGTTCTTTGCCTCAACCCTTGTTTTCCGTGCTTTTCTCAAACCTCGAAACTCTGGATCTCTCCAACAACATGTTTTCGGGGAACATACCCGACCAAATTGGATTGCTTTCCAGCCTAAGGTATCTTGATCTCGGAGGAAACGTTTTGGTGGGAAAGATTCCAAACTCCATCACCAACATGACCACTTTGCAATACCTTACGTTGGCCTCAAACCAGTTAGTGGATACGATACCAGAAGAAATTGGGGTAATGAAGAGCTTGAAGTGGATTTACTTGGGCTACAACAACCTTTCAGGTGAGATTCCAAGTAGCATTGGAGAGTTACTCTCTTTGAATCACCTCGATCTTGTTTACAACAACCTCACTGGGCCTATTCCTTACTCTCTCGGACACCTCACCGAGCTTCAGTATCTCTTTCTCTACCAAAACAAACTAAGTGGTCCAATTCCGGGATCTATCTTTGAGCTCAAAAAGCTAATTTCACTCGATCTAAGTGATAACTCTCTTTCGGGTGAGATTTCTGAGCGTGTGGTTCAGCTCCAGAGGCTGGAGATTCTCCACCTTTTCTCAAACAACTTCACTGGGAAGATTCCAAAGGGTGTTGCATCTCTGCCTCGGCTTCAGGTTCTTCAGCTGTGGTCAAACGGATTAGAAGGTGAGATTCCTGAGGAGCTAGGGAAGCATAGCAACCTCACTGTGTTGGACCTCTCCACCAACAAACTCACAGGGAAGATTCCAGATAACATATGCCACACTGGTAGTCTTTTCAAGCTTATCCTCTTCTCCAACTCTTTCGAAGGTGAAATTCCAAAGAGCTTAACCTCTTGCAGAAGCCTTCGCCGTGTGAGACTCCAAAACAACAAGTTCTCGGGGAAACTATCATCCGAGTTAACCACACTGCCTCAGGTATACTTCTTGGATATCTCTGGTAACCAACTTTCTGGAAGAATCGATGACAAAAAATGGAACATGCCGTCGCTTCAAATGCTCAGTTTGGCTAACAACAACTTCTCAGGAGAAATCCCAAACTCTTTTGGGACTCAAAATCTCGAGGACTTGAACTTATCACACAATCAATTCTCAGGTTCTATTCCACTTGGTTTTAAGACCTTATCAGAACTAGTGGAATTGAAGCTCAGCAATAACAAACTCCTTGGTAACATCCCTGAAGAAATTTGCTCGTGCAAGAAGCTTGTGTCCTTAGACATGAGTCACAACCAGCTCAGTGGTGAAATTCCGGTGAAACTCTCCGAGATGCCGGTTCTCGGCCTCCTCGACCTGTCGGAAAACCAATTCTCCGGTGAGATTCCGCAGAATCTGGGAAGCGTGGAGTCTCTGGTTCAGGTGAACATATCACACAACAATTTCCATGGAAGCTTACCTTCCACCGGTGCTTTCCTTGCCATCAACGCGAGTGCAGTCACAGGTAACAGCCTCTGCGACCGCGACGGTGACGCTTCAAGCGGTTTGCCACCGTGCAAAAACAACAATCAGAACCCGACTTGGCTCTTCATCATGCTGTGTTTTCTACTAGCGTTGGTTGCGTTCGCAGCAGCTTCTTTTCTCGTCTTTTACGTTCGTAGGAGGAAGAGCTTCTCCGAGGTGAGAAGAGTGGAAAACGAAGACGGAAAGTGGGAAGTGCAGTTTTTCGATTCCAAAGCCGCGAGGTTGATCAATGTAGAGGATGTTTTGTCGGCGGTTAAAGAAGGAAAAGTTGTGTCCAAAGGAAGAAACTGGGTTTCGTACGAAGGGAAGTGCATGGAGAATGACATGCAGTTCGTGGTGAAGGAAATTAGTGACTTGAATTCTCTTCCGATGAGTGTGTGGGAAGAGACAGTGAAGGTTGGGAAGGTTCGGCACCCGAATATCGTTAACCTTATTGGGACTTGTAGGTGTGGGAAGAGAGGGTACTTGGTGTACGAACACGAGGAGGGGAAGAAGTTAAGCGAAATTGTGAACAGTTTGAGTTGGCAACATCGTTGCAAAATTGCCTTTGGAGTTGCAAAAGCGCTCAAGTTCTTGCATTCTCACGCTTCACCCATGGTGTTGGTTGGAGAGGTGTCACCAGAGATAGTTTGGGTCGACGCTAAAGGCGTTCCTCGCCTTAAGGTCACCCCTCCCGTAATGCCGTGTTTGGATGCCAAGGGTTTCGTTTCTTCGCCCTACATTGCTCAAGAGGCAAGAGAGAGGAAAAATCTGACAGAGAAGAGTGAGATATATGGGTTCGGAGTGATGCTGATTGAATTATTGACGGGAAGGAGCGCCATGGACATAGAAGCTGGCAATGGCATGCACAAGACAATTGTGGAGTGGGCCCGCTATTGTTACTCAGACTGTCATCTTGACACGTGGATAGATCCTGTGATGAAGGGTGGAGATGCATTGAGCTATCAGAACGACGTCGTTGAGATGATGAATCTGGCACTGCATTGTACCGCCACTGATCCCACCGCAAGGCCATGCGCAAGAGACGTACTCAAAGCCCTAGAGACTGTTCACAGAACCACTTTTTGTTGA 2949 0.4629 MAKGSSTSSKTKSMKFICLFIFILNLFHLSHGDQQEVELLLSFKASLHDPLHVLSNWVSFTSSATICKWHGITCDNNVNSSHVNAVVLSGKNITGEVSSSIFQLPYVTNLDLSNNQFVGEITFNYSLNSLSPIRYLNLSNNNLTGSLPQPLFSVLFSNLETLDLSNNMFSGNIPDQIGLLSSLRYLDLGGNVLVGKIPNSITNMTTLQYLTLASNQLVDTIPEEIGVMKSLKWIYLGYNNLSGEIPSSIGELLSLNHLDLVYNNLTGPIPYSLGHLTELQYLFLYQNKLSGPIPGSIFELKKLISLDLSDNSLSGEISERVVQLQRLEILHLFSNNFTGKIPKGVASLPRLQVLQLWSNGLEGEIPEELGKHSNLTVLDLSTNKLTGKIPDNICHTGSLFKLILFSNSFEGEIPKSLTSCRSLRRVRLQNNKFSGKLSSELTTLPQVYFLDISGNQLSGRIDDKKWNMPSLQMLSLANNNFSGEIPNSFGTQNLEDLNLSHNQFSGSIPLGFKTLSELVELKLSNNKLLGNIPEEICSCKKLVSLDMSHNQLSGEIPVKLSEMPVLGLLDLSENQFSGEIPQNLGSVESLVQVNISHNNFHGSLPSTGAFLAINASAVTGNSLCDRDGDASSGLPPCKNNNQNPTWLFIMLCFLLALVAFAAASFLVFYVRRRKSFSEVRRVENEDGKWEVQFFDSKAARLINVEDVLSAVKEGKVVSKGRNWVSYEGKCMENDMQFVVKEISDLNSLPMSVWEETVKVGKVRHPNIVNLIGTCRCGKRGYLVYEHEEGKKLSEIVNSLSWQHRCKIAFGVAKALKFLHSHASPMVLVGEVSPEIVWVDAKGVPRLKVTPPVMPCLDAKGFVSSPYIAQEARERKNLTEKSEIYGFGVMLIELLTGRSAMDIEAGNGMHKTIVEWARYCYSDCHLDTWIDPVMKGGDALSYQNDVVEMMNLALHCTATDPTARPCARDVLKALETVHRTTFC 982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00964 982 ProSiteProfiles Leucine-rich repeat profile. 158 180 IPR001611 GO:0005515
Pumo10g00964 982 ProSiteProfiles Leucine-rich repeat profile. 374 396 IPR001611 GO:0005515
Pumo10g00964 982 Pfam Leucine rich repeat 230 289 IPR001611 GO:0005515
Pumo10g00964 982 Pfam Leucine rich repeat 157 217 IPR001611 GO:0005515
Pumo10g00964 982 Pfam Leucine rich repeat 493 552 IPR001611 GO:0005515
Pumo10g00964 982 Pfam Leucine rich repeat 349 408 IPR001611 GO:0005515
Pumo10g00964 982 Gene3D Ribonuclease Inhibitor 542 624 IPR032675 -
Pumo10g00964 982 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase 787 982 - -
Pumo10g00964 982 SMART LRR_typ_2 563 587 IPR003591 -
Pumo10g00964 982 SMART LRR_typ_2 373 396 IPR003591 -
Pumo10g00964 982 SMART LRR_typ_2 228 252 IPR003591 -
Pumo10g00964 982 SMART LRR_typ_2 204 226 IPR003591 -
Pumo10g00964 982 SMART LRR_typ_2 276 300 IPR003591 -
Pumo10g00964 982 SMART LRR_typ_2 348 372 IPR003591 -
Pumo10g00964 982 SMART LRR_typ_2 156 180 IPR003591 -
Pumo10g00964 982 SMART LRR_typ_2 468 492 IPR003591 -
Pumo10g00964 982 SMART LRR_typ_2 515 539 IPR003591 -
Pumo10g00964 982 Gene3D Ribonuclease Inhibitor 35 152 IPR032675 -
Pumo10g00964 982 ProSiteProfiles Protein kinase domain profile. 665 980 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g00964 982 Gene3D Transferase(Phosphotransferase) domain 1 787 980 - -
Pumo10g00964 982 SUPERFAMILY RNI-like 88 386 - -
Pumo10g00964 982 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase 35 154 - -
Pumo10g00964 982 SUPERFAMILY L domain-like 348 605 - -
Pumo10g00964 982 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 406 975 - -
Pumo10g00964 982 Gene3D Ribonuclease Inhibitor 437 534 IPR032675 -
Pumo10g00964 982 Gene3D Ribonuclease Inhibitor 343 436 IPR032675 -
Pumo10g00964 982 Gene3D Ribonuclease Inhibitor 244 342 IPR032675 -
Pumo10g00964 982 Gene3D Ribonuclease Inhibitor 153 243 IPR032675 -
Pumo10g00964 982 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase 155 248 - -
Pumo10g00964 982 Pfam Protein tyrosine and serine/threonine kinase 724 972 IPR001245 GO:0004672|GO:0006468
Pumo10g00964 982 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase 330 633 - -
Pumo10g00964 982 Pfam Leucine rich repeat N-terminal domain 34 75 IPR013210 -
Pumo10g00964 982 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase 675 786 - -
Pumo10g00964 982 SUPERFAMILY Protein kinase-like (PK-like) 702 974 IPR011009 -
Pumo10g00964 982 SMART LRR_sd22_2 515 534 - -
Pumo10g00964 982 SMART LRR_sd22_2 372 395 - -
Pumo10g00964 982 SMART LRR_sd22_2 156 188 - -
Pumo10g00964 982 SMART LRR_sd22_2 539 565 - -
Pumo10g00964 982 SMART LRR_sd22_2 276 308 - -
Pumo10g00964 982 Gene3D Phosphorylase Kinase; domain 1 675 786 - -
Pumo10g00964 982 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 251 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00964 Pumo-Chr10 12553851 12557978 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00964 19 974 Receptor kinase-like Gene Family AT2G25790 52.539 0.0 927
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Singleton Pumo10g00964 PK_Tyr_Ser-Thr 1.4e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00964 - - gmx:100777118 1764.2