Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00960 ATGGAAGCACAAGAGTTTTTCCAGAACACCTTCTGCCCCCAATTCCCCTCCGACACCGACACCAACATCACGCCCTCCAACGCCAACCCCTCCGCCACCGCTGACCACTTCATCGTCGAAGACTTCTTCGACTTCTCCAACGACGACGACGCTGCCGTCACCGACAACACCTTCGACTCCCTCCCGACCGACGTCGACTCCCCCACCGTAACCCCCCTCGACACCACCAACAACCCCAATTTCCCCGCCGCCGACGCCCATTTCTCCGGCGACCTCTCCGTCCCGTATGATGATCTTGCGGAATTGGAATGGCTGTCGAAATTCGCGGAGGAATCGTTTTCGAGCGAGGATTTGCAGAAGCTGCAGCTGATATCCGGTGTGAGAGTGCAAAACGACGCCGCGTCGTCCGAAACTCGTGACCCAAACCCGGTGGTGTTCAACCCGCAAGTGTCGGTTCGGGGCAAGGCCCGGAGCAAGCGGACACGTGGGCCCCCATGCAATTGGACCTCTCGCCTCGTCGTCCTCTCCCCCAACACGACGTCGTCTTCTTCTCCCTCCGACGCCGGCAAGAAGCCCGCTCCGGCGCCGAGGAGGAGGGACGCCGCGGAAGGCGGCGGCAGCGAGGGCCGGAAGTGCCTGCATTGCGCCACGGACAAGACCCCGCAGTGGCGGACTGGGCCCATGGGCCCAAAAACGCTCTGCAATGCGTGCGGCGTGAGGTACAAGTCGGGCCGGCTCGTCCCCGAGTACAGGCCCGCAGCGAGCCCAACGTTTGTTCTGACAAAGCACTCCAATTCGCACCGTAAAGTGCTGGAGCTGCGGCGCCAGAAGGAAATGGTGAGCGTCCAGCAGCAGCAGTTGCTCCAACTCCAACATCAGCAGAACGTGATGTTTGATGTCCCATCCAACGGTGAGGATTACTTGATCCATCAACACGCGGGCCCTGATTTCACGCACCTCTTCTAG 966 0.6108 MEAQEFFQNTFCPQFPSDTDTNITPSNANPSATADHFIVEDFFDFSNDDDAAVTDNTFDSLPTDVDSPTVTPLDTTNNPNFPAADAHFSGDLSVPYDDLAELEWLSKFAEESFSSEDLQKLQLISGVRVQNDAASSETRDPNPVVFNPQVSVRGKARSKRTRGPPCNWTSRLVVLSPNTTSSSSPSDAGKKPAPAPRRRDAAEGGGSEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMVSVQQQQLLQLQHQQNVMFDVPSNGEDYLIHQHAGPDFTHLF 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00960 321 MobiDBLite consensus disorder prediction 171 188 - -
Pumo10g00960 321 Gene3D - 205 256 IPR013088 GO:0006355|GO:0008270
Pumo10g00960 321 MobiDBLite consensus disorder prediction 132 211 - -
Pumo10g00960 321 ProSitePatterns GATA-type zinc finger domain. 212 237 IPR000679 GO:0006355|GO:0043565
Pumo10g00960 321 FunFam GATA transcription factor 203 289 - -
Pumo10g00960 321 SMART GATA_3 206 256 IPR000679 GO:0006355|GO:0043565
Pumo10g00960 321 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 207 270 - -
Pumo10g00960 321 ProSiteProfiles GATA-type zinc finger domain profile. 206 242 IPR000679 GO:0006355|GO:0043565
Pumo10g00960 321 Pfam GATA zinc finger 212 245 IPR000679 GO:0006355|GO:0043565
Pumo10g00960 321 PIRSF Txn_fac_GATA_plant 11 302 IPR016679 GO:0003677|GO:0005634|GO:0045893
Pumo10g00960 321 MobiDBLite consensus disorder prediction 192 211 - -
Pumo10g00960 321 MobiDBLite consensus disorder prediction 56 78 - -
Pumo10g00960 321 Coils Coil 273 293 - -
Pumo10g00960 321 PANTHER GATA TRANSCRIPTION FACTOR 29 286 - -
Pumo10g00960 321 CDD ZnF_GATA 211 258 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00960 Pumo-Chr10 12492268 12493814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00960 35 321 C2C2-Gata Transcription Factor Family AT4G32890 48.837 4.12e-89 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pumo10g00960 GATA 2.9e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00960 - - gmx:100776588 514.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g00960 10 12492268 12493814 Pumo10g00960 10 12492268 12493814 ECH