Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00951 ATGAGAGTTTCAACAGAGAAGTCATCATCAGAGACAGAGCCAGAGAACAAGAAGATAAAACGCATTCGCGACTCGAGCAAGCACCCGGTGTACCGTGGCGTGCGGATGCGGAACTGGGGGAAATGGGTGTCGGAAATCCGCGAGCCGAGGAAGAAGTCGCGGATATGGCTAGGCACATTCCCCACGCCGGAAATGGCAGCCAGGGCACACGACGTCGCCGCTCTCAGCATCAAAGGCTCCACCGCCATTCTCAACTTCCCTCACTTAGCCAACTCCCTCCCTCGCCCGGCTTCTCTCGCGCCTCGCGATGTTCAAGCCGCGGCGGCTAAGGCGGCGCACATCGACCCTTCGTCTCTCTCCTCCCTTGTCTCCGCAATGGACTTGTCCTCTGCCTCCGATGAGTTGAGCCAAATAATAGAGCTTCCTTCTTTGGAAAGCACCGATGATCGCTCCGTCCAGTTGGAGAAGGAGTTTGTATTTGTTGATTCCCTCGACGCGTGGATGTACCAGCCACCCTTTGGTTTTGACACGGAACAGGACACTTGTTTCGAGGGTTTCATGTGGAATTACTAG 573 0.555 MRVSTEKSSSETEPENKKIKRIRDSSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGSTAILNFPHLANSLPRPASLAPRDVQAAAAKAAHIDPSSLSSLVSAMDLSSASDELSQIIELPSLESTDDRSVQLEKEFVFVDSLDAWMYQPPFGFDTEQDTCFEGFMWNY 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00951 190 Pfam AP2 domain 29 79 IPR001471 GO:0003700|GO:0006355
Pumo10g00951 190 FunFam Ethylene-responsive transcription factor 2 29 88 - -
Pumo10g00951 190 SMART rav1_2 30 93 IPR001471 GO:0003700|GO:0006355
Pumo10g00951 190 SUPERFAMILY DNA-binding domain 30 88 IPR016177 GO:0003677
Pumo10g00951 190 MobiDBLite consensus disorder prediction 1 27 - -
Pumo10g00951 190 CDD AP2 31 89 IPR001471 GO:0003700|GO:0006355
Pumo10g00951 190 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 9 150 - -
Pumo10g00951 190 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700|GO:0006355
Pumo10g00951 190 PRINTS Ethylene responsive element binding protein signature 53 69 IPR001471 GO:0003700|GO:0006355
Pumo10g00951 190 ProSiteProfiles AP2/ERF domain profile. 30 87 IPR001471 GO:0003700|GO:0006355
Pumo10g00951 190 Gene3D AP2/ERF domain 30 88 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00951 Pumo-Chr10 12360455 12361970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00951 10 180 AP2-EREBP Transcription Factor Family AT5G11590 64.211 2.73e-73 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pumo10g00951 AP2 1.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00951 K09286 - gmx:100813069 340.887
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g00951 10 12360455 12361970 Pumo10g00951 10 12360455 12361970 ECH