Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00942 ATGTGTAACTGTAACACCCTCAAGTTCAACAACCTCTTTAAGAACCGTTTGCTAATGTTCATGCTGGTTCTTTCTCTTTCTCTCCCCTTCAATGTTCAATCCCAAGCCAAAGATAGTGAAGAACAGAACCTGCCACAACTCCCTCAAACGGTTCATCCAAGCAAGGGAATTGTAATAGCAGTTCTCTCCACAATGTTTGCCATAGCATTTCTCTTACTTTTCTATGTTAAATTCTGTCAAGTTAGCCCTCATGAACTTCTGAGCCCAAACTCAAATCTCCAAAACTTTCAGGGCTTAACTCGATCAAGGTCTAGAGCTTCTGGGATTGACAAACAAGTGGTTGAAACACTCCCTTTCTTCAAATTCTCTTCCCTCAAGGGATCCAAAGAGGGCCTAGAATGCACCGTTTGTCTCTCCAAATTCGAGGACACAGAAACTCTAAGACTTCTTCCAAAGTGCAAGCACGCTTTCCACATGAATTGCATTGACAAGTGGTTTGAAAGCCACTCTACGTGCCCTCTTTGTAGACGCAGGGTTGAAGCAGGGGACATCAAGAACCTCAACTGTTCCCTAAGTTCAAGGTTCCTTCGAGTTCCTTCGAATCTAACAGAGGATCCAAACCTTGAAATCTTCGTTCAGAGAGAGCCATCTCATCGAGGGTCATCGAGAAGAGGCTTTTGGGACGTGGGCAAGTGCAAGAAACAAGAGCTACTTATTGAACAAGGTGGTAGTAGTGGTGGTACTTCAAAGTGGAACAAACCTATGCACGTGATGAATCATAAAATAGTTATCTCTGATGTTTTTACGAGGAGCAGGTGGAGTGATCTTAATTCCTCAGACTTGTTGTCATTGAACTGTGAGATGCTTAATGATGTTTGCAGCACGAGATTCTGTTTCGGTCCTTTGGAATCCACCGACAGCGGAAATTTTCACGGAACTTCGAGTAGTTCTAATGAGGAAGAAAATTCGTTTACGGCACTGAATCCTGCGGAGAAGAGGTGCATGTCTGAGATTGCCAATGTTCCGAGGTTTGCACAAACGGGGAAGGAGAATAGGATCAGAGAATGTGTGACATCTAACGAGAGGTTGTGGAGGGTTTGGTTGCCAATTGCGCGAAGAACGGTCCAATGGTTTGCAAAACAAGAAAGGAATTCGGTGGAATTGGAACACAAAACTTTAGCTTCAAATGTTTGA 1194 0.4363 MCNCNTLKFNNLFKNRLLMFMLVLSLSLPFNVQSQAKDSEEQNLPQLPQTVHPSKGIVIAVLSTMFAIAFLLLFYVKFCQVSPHELLSPNSNLQNFQGLTRSRSRASGIDKQVVETLPFFKFSSLKGSKEGLECTVCLSKFEDTETLRLLPKCKHAFHMNCIDKWFESHSTCPLCRRRVEAGDIKNLNCSLSSRFLRVPSNLTEDPNLEIFVQREPSHRGSSRRGFWDVGKCKKQELLIEQGGSSGGTSKWNKPMHVMNHKIVISDVFTRSRWSDLNSSDLLSLNCEMLNDVCSTRFCFGPLESTDSGNFHGTSSSSNEEENSFTALNPAEKRCMSEIANVPRFAQTGKENRIRECVTSNERLWRVWLPIARRTVQWFAKQERNSVELEHKTLASNV 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00942 397 FunFam RING-H2 finger protein ATL43 109 183 - -
Pumo10g00942 397 SMART ring_2 134 175 IPR001841 -
Pumo10g00942 397 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 184 IPR013083 -
Pumo10g00942 397 CDD RING-H2_EL5-like 133 176 - -
Pumo10g00942 397 SUPERFAMILY RING/U-box 114 180 - -
Pumo10g00942 397 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 34 383 - -
Pumo10g00942 397 ProSiteProfiles Zinc finger RING-type profile. 134 176 IPR001841 -
Pumo10g00942 397 Pfam Ring finger domain 133 176 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00942 Pumo-Chr10 12264467 12265823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00942 43 384 C3H Transcription Factor Family AT2G20030 42.458 2.50e-80 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00942 K10664 - gmx:100816668 629.017