Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00937 ATGGAGAGGGTCATCGGCGGGAAGTTTAAGATTGGTCGGAAAATCGGAAGCGGTTCGTTCGGAGAAATTTATATTGCCTCAAATATGGACACCTCTGAGATTGTCGCCATCAAGATGGAAAGCAAGAAGACCAAACATCCACAACTATTGTATGAAGCAAAGTTATATAGTATTCTTCAAGGAGAAAGTGGTATTCCGAGTATGAAGTGGTGCGGTACTGATGGAGACAATAATGTTCTAGTTATCGATCTTCTGGGACGGAGTCTTGAAGACTTTTTTGTCTATTGCGGGAGGAAGTTTTCATTAAAAACAGTTTTGATGTTGGCTGATCAGATGCTGACAAGAATAGAGTACATGCATTCCAAGGGATTTTTGCATAGAGACATCAAACCAGATAACTTCCTTATGGGTCTTGGGAGGAAATCAAGTCAGGTTTATGTTATTGATTTCGGACTAGCAAAAAGATATAGGGACCCTAACACAAACAAGCATATTCCTTACAGAGAGAATAAAAGCTTGACCGGAACTGCACGTTATGCAAGTTGCAACACTCACATGGGAATTGAACAAAGTCGTCGTGATGATTTGGAGTCTCTTGGCTATGTTCTTATGTACTTTTTAAGAGGAAGCCTTCCTTGGCAGGGTTTGAAAGCTGCCACCAAAAAGGAAAAATATGACAATATTTGTGAGAAGAAATTATCAACTCCCATTGAGGTGCTTTGCAAGTCATATCCTGTGGAGTTCTCTACTTACTTTCACTATTGCCAATCCTTGACATTTGATCAACACCCAGATTATGGATACTTGAAGCACCTGTTTCGTGATTTGTTCACAAGAGAAGGATATGATTCCGACTATATATTTGACTGGACCATCCTAAAATATCAGCAGGCGCAACAGACCAAGAAACAAAATCAATCATCTCCTTCAGCTGCAGTGCCTAGCAGTCTAGAACCAGTAGCTGTGGAAAAGCATAAAGGAGTCAACGATTCAGCTCATGTTACTGTAACAAAAATGTTAGCCAATCTTGAACGTCCAAGTGCACGTGTGCAGCCTAAGCCATCTAATGTTCGGAATCTGGATGCCAAGAATCATATCGAGAAACATGTTGTAAACAATATTCCATCCACTTCATCTGCCATACCCAAATCCTCTACAGAAAATGTCTCAAAACCAGAAAGGTCTACAGGAACCTCAAACCTTGGTCGTGTATTTGGGAGTAATTCCCGTGTTTCGAGCAGCTGGATTCCTTCACTACGCCGAATTTCTTCAGCCAAATAG 1281 0.4091 MERVIGGKFKIGRKIGSGSFGEIYIASNMDTSEIVAIKMESKKTKHPQLLYEAKLYSILQGESGIPSMKWCGTDGDNNVLVIDLLGRSLEDFFVYCGRKFSLKTVLMLADQMLTRIEYMHSKGFLHRDIKPDNFLMGLGRKSSQVYVIDFGLAKRYRDPNTNKHIPYRENKSLTGTARYASCNTHMGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAATKKEKYDNICEKKLSTPIEVLCKSYPVEFSTYFHYCQSLTFDQHPDYGYLKHLFRDLFTREGYDSDYIFDWTILKYQQAQQTKKQNQSSPSAAVPSSLEPVAVEKHKGVNDSAHVTVTKMLANLERPSARVQPKPSNVRNLDAKNHIEKHVVNNIPSTSSAIPKSSTENVSKPERSTGTSNLGRVFGSNSRVSSSWIPSLRRISSAK 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00937 426 Gene3D Transferase(Phosphotransferase) domain 1 1 339 - -
Pumo10g00937 426 MobiDBLite consensus disorder prediction 370 426 - -
Pumo10g00937 426 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Pumo10g00937 426 PANTHER CASEIN KINASE-RELATED 9 331 - -
Pumo10g00937 426 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Pumo10g00937 426 ProSiteProfiles Protein kinase domain profile. 9 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g00937 426 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g00937 426 Pfam Protein kinase domain 10 225 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g00937 426 FunFam Casein kinase I isoform delta-like 1 339 - -
Pumo10g00937 426 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00937 Pumo-Chr10 12221302 12227501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00937 9 236 AGC Kinase Gene Family AT3G08720 26.724 4.38e-16 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Pumo10g00937 Pkinase 1e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00937 K08960 K08959 gmx:100792736 808.905