Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00923 ATGGAACAGAGCGAAACGGCGTCGGATTTAGCTCCAAGGAAATTGGCGAGGCAATTGGATTTCACGGCCGTTTACGGAGATCCGTCACACCTGAAACCACCGCCACCGCCGCAGCCGCATTCTCCGTTGCGATTACAGTTGGATTTGCAGCCACCGGGGCAACGGCCGTGGCTATGTTCAGAGCCGCAGGAACAACAGCCGTGGTTACATTCTCCGCGACCGAAGCTAGTTTCGCCGGTTCGTCGAATTCCGCACCCCGTGCAGAAACTTCCGGTGAAGGTGTTGCATGTGGTAAAGCCAGAGTCTCCTAGATCACAACCTCGATGTAATGTGGAATTGAAGGACATCACTCCAAAGAAACAGAAACAATGTAACTGCAAAAATTCTAGATGCCTCAAGTTGTACTGTGAGTGCTTTGCAGCTGGGATCTATTGTGATGGCTGCAACTGTGTCAATTGCCATAATAATGTGGATAATGAGGCTGCCAGACAGGAGGCAGTTGGAATAACATTGGAACGCAATCCAAATGCTTTCAGACCAAAAATTGCTAGCAGTCCGCAAGAAAGAAGAGATTCCAAGGAATGTGAAATTCAAGTAATAGGAAAGCACAATAAAGGATGTCACTGCAAGAAATCAGGTTGCCTTAAGAAGTATTGTGAGTGCTTCCAAGCCAATATCCTCTGCTCTGAAAATTGTAAATGCATGGACTGCAAGAATTTTGAAGGAAGTGATGAAAGAAGAGCAATATTTCACAAAGATTATAATCTAGTTCACATCAAACAGGCAGCTAATGCTACCATTAATGTAGTTGTTGGATCATCTGGCTACGGAACCCATATAACACCCAAGAAGAGAAAAATTCAGGAAATGTTTCCTGGAAAGTCAGCCATGGATCAAACTGTTAACATGACAGCTCAATACCAACAGGAAATTGATCCTATGGCTTCATCGCCTTCATCTCTGTCAGATTCCTTTGTTTCTGACCCTTCCAACACAAGAATTGGGTCTTCAAGATCTACATACCGGTCCGTATTGGCAGATGTCCTCCAGCCACAGAATGTGAAGAATCTCTGTTCACTTTTTGTTGTTCTCTCACGAGTAGCTGCAAAGACAAATGCAGAAATGAGAGGCAAAGTAGACCAGGAAACAAAAACTGGGAACTTTGAAGCTTGTGTTGCTTCATCAGCTAAATCACTGCAAGAAACTAGAGATGTCCACCAGCCTGTTTGTGATGATCATGTGAATAAAGATGAAGCAGATGCAGTTGATATTGCTAATTATAATAGGCCATTGTCACCAGAAACACTGGCATTGATGTGTGATGAACAGGATGATATGCTTTTTGGAAATAGTTCTGCAAATGGAGTTCCATGCAGCAGCACTTTTCAAAACATGATTCAGAAGTCATTTGATTCTGATGGATGCGCTGATGTTTACGGAGAGCAGGAAAGGCTTATATTGACCAAGTTCTTGGACGTTCTTCGTGGACTCGTTACTCATGGTAGCATAAAAGAAACAATGTGCTCTTCATCGACCAAGAAAGGGGAGAGAAGCAAGAAAGAACCTGCAGACAATGGCAATATTGGTGCTGAAACTAACGTTGGGAGTGAGAAGGGAATTCATAGCAACTGCTTTGCAAATTACCTCATCCCATCGGTTACTAAAATATCCCAGACAAATTATGCCATAACTAATGGATATGGTAATAATGATCTTTCGTTGACCTGA 1728 0.4329 MEQSETASDLAPRKLARQLDFTAVYGDPSHLKPPPPPQPHSPLRLQLDLQPPGQRPWLCSEPQEQQPWLHSPRPKLVSPVRRIPHPVQKLPVKVLHVVKPESPRSQPRCNVELKDITPKKQKQCNCKNSRCLKLYCECFAAGIYCDGCNCVNCHNNVDNEAARQEAVGITLERNPNAFRPKIASSPQERRDSKECEIQVIGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSDERRAIFHKDYNLVHIKQAANATINVVVGSSGYGTHITPKKRKIQEMFPGKSAMDQTVNMTAQYQQEIDPMASSPSSLSDSFVSDPSNTRIGSSRSTYRSVLADVLQPQNVKNLCSLFVVLSRVAAKTNAEMRGKVDQETKTGNFEACVASSAKSLQETRDVHQPVCDDHVNKDEADAVDIANYNRPLSPETLALMCDEQDDMLFGNSSANGVPCSSTFQNMIQKSFDSDGCADVYGEQERLILTKFLDVLRGLVTHGSIKETMCSSSTKKGERSKKEPADNGNIGAETNVGSEKGIHSNCFANYLIPSVTKISQTNYAITNGYGNNDLSLT 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00923 575 ProSiteProfiles CRC domain profile. 120 242 IPR005172 -
Pumo10g00923 575 MobiDBLite consensus disorder prediction 510 524 - -
Pumo10g00923 575 PANTHER TESMIN/TSO1-RELATED 30 502 IPR028307 -
Pumo10g00923 575 MobiDBLite consensus disorder prediction 1 47 - -
Pumo10g00923 575 MobiDBLite consensus disorder prediction 508 534 - -
Pumo10g00923 575 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 205 239 IPR005172 -
Pumo10g00923 575 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 121 156 IPR005172 -
Pumo10g00923 575 SMART CXC_2 119 159 IPR033467 -
Pumo10g00923 575 SMART CXC_2 202 243 IPR033467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00923 Pumo-Chr10 12045113 12050360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00923 13 510 CPP Transcription Factor Family AT4G29000 45.301 6.06e-129 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Pumo10g00923 TCR 3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00923 - K21776 gmx:100811459 1040.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g00923 10 12045113 12050360 Pumo10g00923 10 12045113 12050360 ECH