Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00916 ATGGAAGGTGACAGGACAATCCCTGCTGCATCAGATGGGGTGATAGAAGGTGTTCAGAAAATTAGAGCTCTGCATGGGAGGACTACTGGCCCTACAAGGCGCTCTACAAAAGGACAATGGACACCTGAAGAGGACGAGATTTTGCGGAAGGCTGTTCAGCGTTTTAAAGGAAAGAACTGGAAAAAAATAGCGGAGTGTTTCAAGGATAGAACTGATGTACAATGCTTGCATAGGTGGCAGAAAGTCTTAAATCCAGAACTTGTCAAAGGTCCATGGTCTAAAGAGGAGGATGAAATAATTATTGATTTGGTGAATAGATATGGACCTAAAAAGTGGTCTACTATCGCACAACACTTACCTGGACGTATTGGTAAGCAATGTCGAGAAAGGTGGCATAATCATCTTAATCCTACTATAAATAAGGAAGCATGGACGCAGGAAGAGGAGTTGGCTCTCATACGTGCACATCAGATTTATGGGAACAAATGGGCAGAATTAGCGAAGTTATTGCCTGGAAGGACAGACAATGCTATAAAAAACCATTGGAACAGCTCTGTCAAAAAAAAATTGGATTCTTACTTGGCATCGGGCTTGCTTACTCAGTTACAAAATGTACCACTTGTTGGAAATCCGAATCAACCTATTGCTTCAATCTCTTCGAGGTTGCAGCAGAGTGGAGATGATAATGGTCCTAGGGCGACTGAAGGAGAGGAAGCTTCACAGTGTAGCCAGGAGTCAGCTAATGCTGGTCACTTTTCATCAGCCAGAGAGATGGGCAGTGTTACTTTACAAACTGGAGATGAATACAGGCCAAATGAAGAACTAAGTCAAGCATCCTGTTCAGAGCCATATTATGTGTCTCTGGATGAAGTAACTGCATCCCTTCAAGACATGGCTGGCCAAGAGATTTGCACTTCTCAATTCATTGAGCAGAAATATTCACACAAACCTAGAAATTCCACAAATGGGGACTGCCAGCTTGATTTTCTTGACTTGACCAATATCTCCTCACTGGACTTTGGGCAGGAATCATCACAGTTGCAAAATGATTGCGTAGCTCCTAGTGAAAGTCACGACATGGTGAATGTTCCGTTTCAGACTTCGATGGGGTTAGGTGTTGCAACGACCATGGGACCTACATCTATGGACTCTGTTCAACCAGAACACATGTTGATGTCTGATGATGAATGTTGCAGAATCCTATTTTCAGAAGCAATAAGTGATGAATGCTTTCCTTCTGGAGATTATAATAAAGGTGCAAACACGGTTGACTTGTCAGGATGCATCTCATATCTTTGTCAGTCATCATTACCATCTGTCCCATCAGTAGTTTCTTCTACTGGTGATAGGTTGACATATACGGCCGAAGCCAATCAGTTGGTTGGGTCTGAGGATCAGCAGTTTGTCTCCAGAACACAGGACAACATAATTTATACCAATGATTTATCCAGTTCTCCTAGTATCCATAGGATAGACAGCACAGAAATGCAAGAGCCATCAGATGTTGTGAAAGATGATTCAAAATTGGTCCCTGTAAATAGTTTTGGCTGTGGATCAGATGCTAAGCAAACTTCCTATCCAACGGATGAAAAGCCAAATGTGCATACAGAACAGGAGGACACAGGTGCTCTATGTTATGAACCTCCCCGCTTTCCAAGCTTAGACATTCCTTTCTTAAGCTGTGATCTTATACAATCTGGGGGTGATATGCAGCAGGAATTCAGTCCCCTAGGTATCCGCCAATTTATGATGTCTTCTATGAACTGTCTAACTCCTTTTAGATTATGGGACTCACCTTCTCGTGATGATAGTCCAGATGCTTTGTTAAAAAGTGCAGCTAAAACCTTCACAGGTACACCATCTATATTAAAGAAACGAACCCGAGACCTTTTATCTCCACTATCAGATAAAAGAATCGACAAGAAACTTGAGATTGAAATGACATCAACCTTGATAAAAAACTTTTCCCGATTGGATGTAATGTTTGATGACAATGAGACTCAGGGAGCAGATTTGCTTCCTGCATCTTCAATGCAAAAGAGGGACTCTGGTACCTCTGTTGAAGGTGATAAAGAGAATTGTGGACAAGCTGTTAACGTTGAACAAGTAAAGGATAAAAATAAGTCTGCAATTTTGGACGACAAAAAATCAGAAGACAATTCAGGTGACAATAATTCTCAGGATAAAATTAAGCAGCAACCTCTTGATGTTGATTCTGAGATAAAGAATGATGCTGAGATTGTGCAACAACCATCTGGAATTTTGGTTGAACATGATATGAATGACCTGTTACTGTATTCACCTGATCAGGTTAATTTGAAATCAGAAAGAGTTCTTAGTTTAAGTGCTAGAACTAAAAAAAATCCGTGCTCAAGGATTAACTCACCATCTGTTTGGATAAAGGAGCATGAAAGACTTTCAGTTGCTGTTACTTGTGTACAGTCTGTCAGTTCATCAGGTCCAGGGGAGAATTCGGGTGATCACACTGGAAACAATGGTGGTCTTGAAACATTTAACATATTTGGTGGAACACCTTTTAGGAAAAGCATTGAATCGCCTTCAGCATGGAAATCTCCCTGGTTCATCAACACTTTTTTGTCCAGCCCCAGGATTGATACTGAAATTACAATTGAGGATTTTGGGTATTTCATGAGCCCTGGTGACAGAAGCTACGATGCAATTGGGTTGATGAAACAGATCAGTGAACAAACTGCCGCTCAATATGCCAGTGCTCAAGAGATTTTGGGAAATGAGACTCCTATGGCGTTACCAAAAGATGCGTCTGGAAATGACAGGGATGAAGACATCGATGCTCATAATCAGCATGGGAACCATTCTCAGTTGGCTTCTTCAAGTGCTTTGGTGGAGCGACGTGTACTTGACTTCAGTGAATGTGGAACTCCGGTCAAAGGTGATAACAGCAAATCCTCAGCTATGAGCTTCTCAAGCCCTTCTTCGTACTTGTTGAAGGGCTGTAGATAG 2982 0.4165 MEGDRTIPAASDGVIEGVQKIRALHGRTTGPTRRSTKGQWTPEEDEILRKAVQRFKGKNWKKIAECFKDRTDVQCLHRWQKVLNPELVKGPWSKEEDEIIIDLVNRYGPKKWSTIAQHLPGRIGKQCRERWHNHLNPTINKEAWTQEEELALIRAHQIYGNKWAELAKLLPGRTDNAIKNHWNSSVKKKLDSYLASGLLTQLQNVPLVGNPNQPIASISSRLQQSGDDNGPRATEGEEASQCSQESANAGHFSSAREMGSVTLQTGDEYRPNEELSQASCSEPYYVSLDEVTASLQDMAGQEICTSQFIEQKYSHKPRNSTNGDCQLDFLDLTNISSLDFGQESSQLQNDCVAPSESHDMVNVPFQTSMGLGVATTMGPTSMDSVQPEHMLMSDDECCRILFSEAISDECFPSGDYNKGANTVDLSGCISYLCQSSLPSVPSVVSSTGDRLTYTAEANQLVGSEDQQFVSRTQDNIIYTNDLSSSPSIHRIDSTEMQEPSDVVKDDSKLVPVNSFGCGSDAKQTSYPTDEKPNVHTEQEDTGALCYEPPRFPSLDIPFLSCDLIQSGGDMQQEFSPLGIRQFMMSSMNCLTPFRLWDSPSRDDSPDALLKSAAKTFTGTPSILKKRTRDLLSPLSDKRIDKKLEIEMTSTLIKNFSRLDVMFDDNETQGADLLPASSMQKRDSGTSVEGDKENCGQAVNVEQVKDKNKSAILDDKKSEDNSGDNNSQDKIKQQPLDVDSEIKNDAEIVQQPSGILVEHDMNDLLLYSPDQVNLKSERVLSLSARTKKNPCSRINSPSVWIKEHERLSVAVTCVQSVSSSGPGENSGDHTGNNGGLETFNIFGGTPFRKSIESPSAWKSPWFINTFLSSPRIDTEITIEDFGYFMSPGDRSYDAIGLMKQISEQTAAQYASAQEILGNETPMALPKDASGNDRDEDIDAHNQHGNHSQLASSSALVERRVLDFSECGTPVKGDNSKSSAMSFSSPSSYLLKGCR 993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00916 993 CDD SANT 91 135 IPR001005 -
Pumo10g00916 993 FunFam Transcriptional activator Myb isoform A 89 141 - -
Pumo10g00916 993 Gene3D - 89 140 - -
Pumo10g00916 993 Gene3D - 142 202 - -
Pumo10g00916 993 SUPERFAMILY Homeodomain-like 33 89 IPR009057 -
Pumo10g00916 993 Pfam Myb-like DNA-binding domain 37 83 IPR001005 -
Pumo10g00916 993 Pfam Myb-like DNA-binding domain 89 135 IPR001005 -
Pumo10g00916 993 Pfam Myb-like DNA-binding domain 141 183 IPR001005 -
Pumo10g00916 993 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 83 IPR017930 -
Pumo10g00916 993 MobiDBLite consensus disorder prediction 706 725 - -
Pumo10g00916 993 MobiDBLite consensus disorder prediction 669 736 - -
Pumo10g00916 993 MobiDBLite consensus disorder prediction 221 255 - -
Pumo10g00916 993 Gene3D - 36 88 - -
Pumo10g00916 993 MobiDBLite consensus disorder prediction 970 993 - -
Pumo10g00916 993 FunFam Transcription factor MYB3R-2 142 204 - -
Pumo10g00916 993 MobiDBLite consensus disorder prediction 927 941 - -
Pumo10g00916 993 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 140 190 IPR017930 -
Pumo10g00916 993 FunFam Transcriptional activator Myb isoform A 36 88 - -
Pumo10g00916 993 CDD SANT 40 83 IPR001005 -
Pumo10g00916 993 SMART sant 88 137 IPR001005 -
Pumo10g00916 993 SMART sant 140 188 IPR001005 -
Pumo10g00916 993 SMART sant 36 85 IPR001005 -
Pumo10g00916 993 SUPERFAMILY Homeodomain-like 86 182 IPR009057 -
Pumo10g00916 993 MobiDBLite consensus disorder prediction 970 987 - -
Pumo10g00916 993 MobiDBLite consensus disorder prediction 916 952 - -
Pumo10g00916 993 ProSiteProfiles Myb-like domain profile. 136 186 IPR001005 -
Pumo10g00916 993 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 84 139 IPR017930 -
Pumo10g00916 993 ProSiteProfiles Myb-like domain profile. 84 135 IPR001005 -
Pumo10g00916 993 CDD SANT 143 183 IPR001005 -
Pumo10g00916 993 ProSiteProfiles Myb-like domain profile. 32 83 IPR001005 -
Pumo10g00916 993 PANTHER MYB PROTEIN-RELATED 37 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00916 Pumo-Chr10 11943359 11950241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00916 15 993 MYB Transcription Factor Family AT4G32730 45.111 0.0 746
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo10g00916 Myb_DNA-binding 2.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00916 - K09420 gmx:100811335 1843.17