Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00900 ATGGAAAGGGAACGAACACGGAAACGCCCTCGTCTCGCGTGGGACGTAGCCCCTCCCTCAGTGCCCGAGGCGCAACGGGCTCTGCCGGTGCCCGGTGACGAAGGATTCGAAAGAAAGCACGTTTCGCCTCCGAAAAGGGACGACGATCGAGAGGGCCATTATGTCTTCAATCTCGGCGAAAATCTCACTCCTAGATATAAAATCCTCAGCAAGATGGGTGAAGGCACATTTGGTCGGGTTTTGGAATGTTGGGACCGCCAAACCAGAGAATATGTGGCTATCAAGATAGTTAGAAGCATACGAAAATATCGGGATGCAGCGATGCTCGAGGTTGATGTGCTTCAACAACTAGCCAAGAATGATAGAGGAAGCTCACGATGTGTGCAGATCAGAAATTGGTTTGATTACCGAAATCACATATGCATTGTCTTTGAGAAGCTTGGACCAAGCTTATTTGATTTTCTAAAGAGAAATAAATACTGCCCATTCCCTGTGGATCTTGTTCGGGAATTTGGACGTCAGCTTTTGGAATCTGTAGCATATATGCATGAACTACGCCTAATCCACACTGACCTGAAGCCAGAAAATATACTTCTTGTTTCTTCTGAATATGTAAAGCTCCCTAGCTATAAGAGAGTTTCCTCAGATGAAACGCAATTCAGGTGCTTGCCCAAGTCTAGTGCTATTAAGCTGATTGATTTTGGTAGTACTGCATATGATAATCAGAATCATAGCTCCATTGTTTCTACAAGGCATTACAGAGCCCCTGAGATTATTCTAGGTCTAGGATGGTCATATCCATGTGATTTGTGGAGTGTTGGATGTATTCTCATCGAACTATGCTCGGGTGAAGCATTGTTTCAGACTCATGAAAACTTGGAGCACTTGGCAATGATGGAGAGAGTTTTGGGACCTATTCCAGAGCACATGATTCACAGGTCTAACAAGGGCGCAGAAAAATATTTCAAGCGTGGATCGCGACTAAGATGGCCTGAAGGAGCTGTTTCAAGGGAGAGCATTAGTGCAGTGAAGAAGCTTGGTCATCTTAAGGATATTGTATCACGAAATGTGGACTCTTCAAGGTCCTCCTTAACTGACTTGTTACAGGGCTTATTAACATATGATCCGACCAAACGCCTAACAGCTCGCCAAGCCCTGGATCATCCCTTTTTTAAGAATCCAACTTAA 1188 0.4478 MERERTRKRPRLAWDVAPPSVPEAQRALPVPGDEGFERKHVSPPKRDDDREGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTREYVAIKIVRSIRKYRDAAMLEVDVLQQLAKNDRGSSRCVQIRNWFDYRNHICIVFEKLGPSLFDFLKRNKYCPFPVDLVREFGRQLLESVAYMHELRLIHTDLKPENILLVSSEYVKLPSYKRVSSDETQFRCLPKSSAIKLIDFGSTAYDNQNHSSIVSTRHYRAPEIILGLGWSYPCDLWSVGCILIELCSGEALFQTHENLEHLAMMERVLGPIPEHMIHRSNKGAEKYFKRGSRLRWPEGAVSRESISAVKKLGHLKDIVSRNVDSSRSSLTDLLQGLLTYDPTKRLTARQALDHPFFKNPT 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00900 395 FunFam Serine/threonine-protein kinase AFC2 53 146 - -
Pumo10g00900 395 Gene3D Phosphorylase Kinase; domain 1 53 146 - -
Pumo10g00900 395 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672|GO:0006468
Pumo10g00900 395 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 32 393 - -
Pumo10g00900 395 SMART serkin_6 66 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g00900 395 MobiDBLite consensus disorder prediction 1 51 - -
Pumo10g00900 395 CDD PKc_CLK 53 391 - -
Pumo10g00900 395 SUPERFAMILY Protein kinase-like (PK-like) 53 393 IPR011009 -
Pumo10g00900 395 FunFam Serine/threonine-protein kinase AFC2 142 391 - -
Pumo10g00900 395 Pfam Protein kinase domain 66 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo10g00900 395 Gene3D Transferase(Phosphotransferase) domain 1 120 391 - -
Pumo10g00900 395 MobiDBLite consensus disorder prediction 32 51 - -
Pumo10g00900 395 ProSiteProfiles Protein kinase domain profile. 66 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00900 Pumo-Chr10 11726270 11729686 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00900 65 393 Core Cell Cycle Gene Families AT3G48750 27.679 6.07e-29 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Pumo10g00900 Pkinase 1.1e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00900 K08287 - gmx:100782453 788.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g00900 10 11726270 11729686 Pumo10g00900 10 11726270 11729686 ECH