Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00897 ATGCAAAAGGAAAAGGAAGCAATTATCAAGGAGGGGACGGATTTAGAAATGGAAGGAACTCGTGCAAAAGAGGAAACCCTACCACCGGGATTTCGATTTCATCCTACCGATGAAGAACTTATCACTTGCTATCTCATAAATAAGATATCGGATTCTAATTTTACAGGGAGAGCAATAACTGATGTAGATCTCAACAAATGTGAGCCATGGGAGCTGCCAGGGAAGGCAAAGATGGGAGAAAAAGAATGGTACTTCTTCAGTCTGAGAGACCGTAAATACCCTACGGGTGTGAGAACCAATCGAGCAACTAACACCGGGTATTGGAAGACCACAGGAAAAGACAAAGAGATCTTCAACAGTGCAACATCGGAGTTGATCGGCATGAAGAAGACTTTAGTTTTCTACAAAGGCAGAGCTCCCAGAGGAGAAAAAAGCAACTGGGTCATGCATGAATACCGCATTCACTCAAAATCCAGCTTTAGAACTAACAGGCAGGATGAATGGGTGGTTTGCCGGGTATTCAAGAAGAGTGGTGGTGCAAAGAAGTACCCTTCCTCGAACCATGCAAGAGCAGTGAATCCATACAGCTTGGAAATAGGGCCAAATATAATGCCAGCACCAATTATGCAACTGGGAGATCCTGGTGCTCATTTCCTTTATGGACGAAATTACATGAGCAGTGCAGAGTTAGCTGAACTTGCTAGGGTTTTGAGAGGGGGTGGATCAACCAGTAGTGTCAACAACCTGCCAATTCATCAATCCCAGTTGAGCTACCCTACATCATCATCAGCAGGAGGAGGATTCACCATTTCAGGGCTCAATTTGAATCTTGGAGGAGGAGGAGGAGCAACAGCCACAACACAACCCATTTTGCGACCAATGCAACCTTCTCCTCCTGCTCCTGTTCATTCAATGACTCATCAAGTACTTGATGTCAATTCCAGCATGATGACAGCCACTTCTCTTGGTACCGAGAATAATGTAGGTTATGGATCAGAAATGAGTAACATGAATAATTCTCATGGTCATGGCAATAGGTATATGGGCATGGACCATTGCATGGATCTAGACAACTATTGGCCTTCCTACTAA 1092 0.4432 MQKEKEAIIKEGTDLEMEGTRAKEETLPPGFRFHPTDEELITCYLINKISDSNFTGRAITDVDLNKCEPWELPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSATSELIGMKKTLVFYKGRAPRGEKSNWVMHEYRIHSKSSFRTNRQDEWVVCRVFKKSGGAKKYPSSNHARAVNPYSLEIGPNIMPAPIMQLGDPGAHFLYGRNYMSSAELAELARVLRGGGSTSSVNNLPIHQSQLSYPTSSSAGGGFTISGLNLNLGGGGGATATTQPILRPMQPSPPAPVHSMTHQVLDVNSSMMTATSLGTENNVGYGSEMSNMNNSHGHGNRYMGMDHCMDLDNYWPSY 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00897 363 Pfam No apical meristem (NAM) protein 28 154 IPR003441 GO:0003677|GO:0006355
Pumo10g00897 363 ProSiteProfiles NAC domain profile. 27 176 IPR003441 GO:0003677|GO:0006355
Pumo10g00897 363 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 24 287 - -
Pumo10g00897 363 SUPERFAMILY NAC domain 22 176 IPR036093 GO:0003677|GO:0006355
Pumo10g00897 363 Gene3D NAC domain 36 179 IPR036093 GO:0003677|GO:0006355
Pumo10g00897 363 FunFam NAC domain-containing protein 100-like 36 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00897 Pumo-Chr10 11703940 11706718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00897 21 363 NAC Transcription Factor Family AT2G24430 53.151 3.51e-115 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo10g00897 NAM 2.6e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00897 - - gmx:100804931 635.95