Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00880 ATGCAACAGAGGCTAAAGTTGCAGCAACAACAAGCCCTCATGCAGCAAGCTTTGCTTCAACAACAGCAGATGTACCACCCTGGCATGCTCGCCGCTGCTATGTCTCAGATGGAGCCTGTTCCAAGTGGAAATTTGCCTCCTGGTTTTGATACGACTGCATGCCGTAGTGTTTATGTAGGAAATATTCATGTAAATGTCACCGATAAACTTCTTGCAGAAGTTTTTCAGAGTGCTGGTCCTCTTGCTGGCTGCAAGCTTATTAGAAAAGAAAAGTCCTCTTATGGTTTTGTGGACTACCACGATCGAGCATCTGCAGCCCTTGCAATAATGACATTACATGGACGGCAACTGTATGGTCAAGCACTTAAGGTGAATTGGGCATATGCCAATAGCAGTAGGGAAGATACATCAGGGCACTTCAATATATTTGTCGGTGATTTGAGTCCAGAGGTTACTGATGCAACTTTATTTGCTTGCTTCTCAGTCTATCCTAGTTGTTCTGATGCAAGGGTTATGTGGGATCACAAAACTGGTCGGTCAAAAGGATATGGTTTTGTTTCTTTCCGTGATCATCAGGATGCTCAAAGTGCCATAAATGATATGACAGGTAAGTGGCTGGGAAATAGGCAAATACGATGCAACTGGGCAACTAAGGGTGCTGGTGGCAGCTCCACTGAAGAGAAGAACAATGACAGCCAAAATGCTGTTGTGCTTACAAATGGATCTTCAGATGGAGGTCAAGATAATAACAATGAGGATGCTCCTGAAAACAATCCTTCATACACCACAGTTTATGTTGGCAACCTTCCTCATGATGTAACACAAGCTGAACTTCATTGTCAGTTCCACGCACTGGGGGCTGGGGTAATTGAGGAGGTCCGAGTTCAGAGGGATAAGGGTTTTGGATTTGTCAGATACAACACTCATGAGGAAGCTGCGTTGGCCATTCAGATGGCTAATGGAAGACTAATTCGTGGGAAGAATATGAAGTGTTCATGGGGTAGTAAACCAACTCCACCTGGAACAGCTTCAAATCCACTACCTCCTCCTGCTCAACCATATCAAATACTTCCCACTGCAGGGATGAACCAAGGGTATTCTCCTGCTGAGTTGTTGGCTTATCAGCGCCAACTGGCCTTGAGTCAGGCCGCTGTATCTGGTCTGTCAGGTCAAGCTCTTCTGCAAATGACTGGACAACCTGGCCTAGCTCCTGCTTCGATGGGCATAAACTCTGGGGGATCTCAAGCCATGTATGATGGATATACCGGTAATTCATCAAGACAGCAGCTTATGTACTATCGTTGA 1305 0.4552 MQQRLKLQQQQALMQQALLQQQQMYHPGMLAAAMSQMEPVPSGNLPPGFDTTACRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSSYGFVDYHDRASAALAIMTLHGRQLYGQALKVNWAYANSSREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGAGGSSTEEKNNDSQNAVVLTNGSSDGGQDNNNEDAPENNPSYTTVYVGNLPHDVTQAELHCQFHALGAGVIEEVRVQRDKGFGFVRYNTHEEAALAIQMANGRLIRGKNMKCSWGSKPTPPGTASNPLPPPAQPYQILPTAGMNQGYSPAELLAYQRQLALSQAAVSGLSGQALLQMTGQPGLAPASMGINSGGSQAMYDGYTGNSSRQQLMYYR 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00880 434 SUPERFAMILY RNA-binding domain, RBD 251 345 IPR035979 GO:0003676
Pumo10g00880 434 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 262 336 IPR000504 GO:0003723
Pumo10g00880 434 SMART rrm1_1 141 214 IPR000504 GO:0003723
Pumo10g00880 434 SMART rrm1_1 56 125 IPR000504 GO:0003723
Pumo10g00880 434 SMART rrm1_1 263 332 IPR000504 GO:0003723
Pumo10g00880 434 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 140 218 IPR000504 GO:0003723
Pumo10g00880 434 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 43 339 - -
Pumo10g00880 434 Gene3D - 240 340 IPR012677 -
Pumo10g00880 434 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 129 IPR000504 GO:0003723
Pumo10g00880 434 Gene3D - 1 138 IPR012677 -
Pumo10g00880 434 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 123 IPR000504 GO:0003723
Pumo10g00880 434 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 142 212 IPR000504 GO:0003723
Pumo10g00880 434 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 264 329 IPR000504 GO:0003723
Pumo10g00880 434 CDD RRM2_PUB1 139 218 - -
Pumo10g00880 434 MobiDBLite consensus disorder prediction 217 261 - -
Pumo10g00880 434 FunFam Oligouridylate-binding protein 1C 239 340 - -
Pumo10g00880 434 FunFam Nucleolysin TIAR-like protein 1 138 - -
Pumo10g00880 434 Gene3D - 139 219 IPR012677 -
Pumo10g00880 434 SUPERFAMILY RNA-binding domain, RBD 39 133 IPR035979 GO:0003676
Pumo10g00880 434 FunFam Nucleolysin TIAR-like protein 139 237 - -
Pumo10g00880 434 SUPERFAMILY RNA-binding domain, RBD 135 245 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00880 Pumo-Chr10 11547663 11555538 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00880 56 336 Eukaryotic Initiation Factors Gene Family AT2G23350 28.767 9.03e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00880 K13201 - gmx:100777108 828.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g00880 10 11547663 11555538 Pumo10g00880 10 11547663 11555538 ECH