Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00876 ATGGAGCTAAAAAATGAGAAGCTAGTCAGGTTCTCCAATGATGGAAAACAGACTCTTGGACCTCCTTGGGAAAACATAGACTCCCACAAACACCATGAGAAGCCATTCACAGTCTATCCAGAATTCAAAATGAGTAATGGTGAAAAGAACAGAATGAGTATCAAAATTCCCTCGCTTGGAAAGTTGAAGGTTTTCCCAGAAAATCATGAGCCATGGAAGAAGAGAATTCTTGATCCTGGCAGTGATGCCATTTTGGAGTGGAACCGGGCTTTCCTGTTTTCTTGCATTCTGGCACTGTTTGTTGATCCACTCTTTTTCTACCTCCCCTCAGTAGCAAATGATGGCAAGTCATCATGTATGGCTACTGATTTGAATCTAGGAATTGTTGTGACATGTTTCCGGACATTTGCTGATGTTTTCTACCTGCTCAACATGGCCATCAAGTTCAGAACTGCTTATGTGTCACCAAGTTCAAGGGTTTTTGGTAGGGGTGAGCTTGTTATGGATCCTAGGTTGATTGCAAGGCGGTATTTGAGATCAGAGTTCTTCCTAGATCTTGTTGCTACACTGCCTCTTCCACAGATTGTGATTTGGTTTATTATGCCAGCAATTAGAAGCTCCCATGCTGATCATACCAACAATGCACTTGTACTGATTGTTCTGCTTCAATATGTCCCCAGATTATATATGATTTTCCCATTAAGTTCTCAGATTATTAAAGCCACTGGTGTGGTTACAAAGACAGCTTGGGCTGGAGCTGCTTACAATCTTTTACTATACATGTTAGCTAGTCATGTCTTGGGGGCATCCTGGTACTTGTTATCAATTGAAAGGCATGCTAGTTGCTGGAAATCTGAATGCAGAAATGAAAGCCTCCCTGTGAAATGTGCTCTTAAGTACTTAGATTGCAGTACTTTAAACCATGATGATCGCATGAAGTGGGTAAACACTACTTCTGTGTTTGGTAACTGCAATCCAGAAAATAGCATCAGTTTCAACTATGGAATTTTTGGAAATGCAGTGGAAAACAATGTTGTCTCCTCTGCATTTGTAGAGAAGTATCTCTATTGTCTGTGGTGGGGCTTACAGAACTTGAGTTCCTATGGCCAGAGTTTGACTACGAGCACATTCGTTTGGGAAACTGCATTTGCAATACTCATAGCTATTCTGGGTCTGGTTTTGTTTGCCCACTTAATTGGTAACATGCAGACCTATTTGCAATCCATTACTGTGAGGCTTGAAGAGTGGAGGCTCAAGCGACGTGACACTGAAGAGTGGATGAGCCATCGCCAGCTCCCACAAAATCTCAGAGAGCGTGTCCGAAGATTTGTTCAGTACAAGTGGCTTGCAACTAGCGGGGTTGATGAAGAAACAATCCTACGTGGCCTGCCTACTGACCTACGTAGAGATATCCAACGCCACCTTTGCTTGGACCTTGTTCGACGTGTTCCCTTTTTCTCACAAATGGATGATCAGCTACTTGATGCAATATGTGAGAGATTGGTATCATCCTTGAGTACTCAAGGCACATACATTGTCAGAGAAGGAGATCCGGTTACAGAGATGCTTTTTGTCATCAGAGGGAGACTTGAAAGCTCAACCACAAATGGAGGCAGAACTGGTTTCTTTAACTCTATTACCTTGAGGCCAGGTGATTTCTGCGGAGAAGAGCTACTTGCTTGGGCATTGCTTCCAAAATCCACTCTCAACTTGCCTTCTTCTACAAGAACAGTTAAGGCCCTTGTGGAAGTGGAAGCTTTTGCACTAAGAGCAGAAGATCTTAAATTTGTTGCCAACCAGTTCAGACGTCTCCACAGCAAGAAGTTACAGCACACTTTTCGTTTCTACTCCTACCATTGGAGGACATGGGCGGCATGCTTCATTCAGGCTGCTTGGCGCCGGTTCAAGAAGAGAATGTTGGCAAAGAGCCTTAGCTTGAGGGAATGCCAGTCCTTCAATCATGATGAACAAGTCAGGGATGAAATGGAACATGGGGAAGAAGAGCACAGTGCAGTGACTTCAAACACTGCACAAGTAAAACAGAACCTAGGTGTCACTATACTGGCTTCTAGGTTTGCTGCAAACACAAGGAGAGGGGTTCAGAAGATCAAGGATGTAGAGTTGCCCAAGTTTCAAAAGCCTGAAGAGCCAGACTTTTCAGTAGAGCCTGATGATTGA 2178 0.4353 MELKNEKLVRFSNDGKQTLGPPWENIDSHKHHEKPFTVYPEFKMSNGEKNRMSIKIPSLGKLKVFPENHEPWKKRILDPGSDAILEWNRAFLFSCILALFVDPLFFYLPSVANDGKSSCMATDLNLGIVVTCFRTFADVFYLLNMAIKFRTAYVSPSSRVFGRGELVMDPRLIARRYLRSEFFLDLVATLPLPQIVIWFIMPAIRSSHADHTNNALVLIVLLQYVPRLYMIFPLSSQIIKATGVVTKTAWAGAAYNLLLYMLASHVLGASWYLLSIERHASCWKSECRNESLPVKCALKYLDCSTLNHDDRMKWVNTTSVFGNCNPENSISFNYGIFGNAVENNVVSSAFVEKYLYCLWWGLQNLSSYGQSLTTSTFVWETAFAILIAILGLVLFAHLIGNMQTYLQSITVRLEEWRLKRRDTEEWMSHRQLPQNLRERVRRFVQYKWLATSGVDEETILRGLPTDLRRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLVSSLSTQGTYIVREGDPVTEMLFVIRGRLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLPKSTLNLPSSTRTVKALVEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSYHWRTWAACFIQAAWRRFKKRMLAKSLSLRECQSFNHDEQVRDEMEHGEEEHSAVTSNTAQVKQNLGVTILASRFAANTRRGVQKIKDVELPKFQKPEEPDFSVEPDD 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00876 725 SMART cnmp_10 485 616 IPR000595 -
Pumo10g00876 725 SUPERFAMILY cAMP-binding domain-like 415 607 IPR018490 -
Pumo10g00876 725 Gene3D Helix hairpin bin 413 476 - -
Pumo10g00876 725 FunFam Cyclic nucleotide-gated ion channel 1 412 476 - -
Pumo10g00876 725 Pfam Cyclic nucleotide-binding domain 508 596 IPR000595 -
Pumo10g00876 725 Gene3D - 104 411 - -
Pumo10g00876 725 SUPERFAMILY Voltage-gated potassium channels 82 407 - -
Pumo10g00876 725 MobiDBLite consensus disorder prediction 704 718 - -
Pumo10g00876 725 CDD CAP_ED 485 616 IPR000595 -
Pumo10g00876 725 Gene3D Jelly Rolls 483 603 IPR014710 -
Pumo10g00876 725 ProSiteProfiles cAMP/cGMP binding motif profile. 485 568 IPR000595 -
Pumo10g00876 725 Pfam Ion transport protein 87 412 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Pumo10g00876 725 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 68 719 - -
Pumo10g00876 725 FunFam Cyclic nucleotide-gated ion channel 1 483 601 - -
Pumo10g00876 725 MobiDBLite consensus disorder prediction 704 725 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00876 Pumo-Chr10 11512240 11517352 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00876 10 722 Ion Channels AT2G24610 71.231 0.0 1063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00876 K05391 - gmx:100803334 1419.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g00876 10 11512240 11517352 Pumo10g00876 10 11512240 11517352 ECH