Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pumo10g00873 | ATGGCAGTGGAGCTGATGGGGTTTCCGAAAATGGACCAACAGAAGGCAATTGAAGAAGCAGCCTCCGAAGGCCTCAAGGGCATGGAACACCTCGTCCGTCTCCTCTCCCACCAACCCTCTCACCTCCACACTGACCTCACCGACGTCACCGTTTCCAAGTTCAAAAAACTCATCTCCTTACTCAACCGCACCGGCCACGCCCGTTTCCGTCGCGCACCACTCCCTCCAGAAAACACTCTCGCCCCATCCCCGCCACCGGCTAATCCGGTCACCCTTCACCAACCTCCCTCCACTTTCGTCCCTCCGCAGTCCCACACTCTAACCCTCGATTTCACCAAACCTAACATCTTCATCTCCAACGCCAACGCCAACTCCATCGATCTTGAGTTCTCCAAAGGAACCTTCAGCGTCTCCTCCAACTCCTCCTTCATGTCCTCCGCCATCACCGGCGACGCCCCCTCCGCACCGCCGTCCTCCGCCGGAAAACCGCCTCCGACCAAGAAGAGGTGCCACGACCACCGCGACCACTCCGACGACATCTCCGGCTCCACCAAGTGCCACTGCGTCAAGAGAAGGAAGAATCGTGTGAAGAAAACGGTTAGAGTGCCGGCGATTAGTTCGAAGATCGCCGATATTCCGCCGGACGAGTACTCGTGGAGGAAGTACGGGCAGAAGCCGATCAAGGGATCGCCGTACCCGAGGGGGTATTACAAGTGCAGTACCGTGAGAGGGTGTCCGGCGAGGAAACACGTGGAGCGTGCTTCGGATGATCCGACGATGTTGATTGTGACGTACGAGGGGGAGCACCGTCACTCGATTCAGGCCGCGATGCAGGAGAACATTTCCGGGGGCGTGGGTTTGGTATTCGAGTCAACGTGA | 879 | 0.5813 | MAVELMGFPKMDQQKAIEEAASEGLKGMEHLVRLLSHQPSHLHTDLTDVTVSKFKKLISLLNRTGHARFRRAPLPPENTLAPSPPPANPVTLHQPPSTFVPPQSHTLTLDFTKPNIFISNANANSIDLEFSKGTFSVSSNSSFMSSAITGDAPSAPPSSAGKPPPTKKRCHDHRDHSDDISGSTKCHCVKRRKNRVKKTVRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERASDDPTMLIVTYEGEHRHSIQAAMQENISGGVGLVFEST | 292 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pumo10g00873 | 292 | ProSiteProfiles | WRKY domain profile. | 208 | 274 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Pumo10g00873 | 292 | FunFam | WRKY transcription factor 65 | 197 | 274 | - | - | |
Pumo10g00873 | 292 | SUPERFAMILY | WRKY DNA-binding domain | 211 | 273 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Pumo10g00873 | 292 | MobiDBLite | consensus disorder prediction | 148 | 184 | - | - | |
Pumo10g00873 | 292 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 14 | 276 | IPR044810 | GO:0003700 | |
Pumo10g00873 | 292 | Pfam | WRKY DNA -binding domain | 215 | 271 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Pumo10g00873 | 292 | MobiDBLite | consensus disorder prediction | 165 | 184 | - | - | |
Pumo10g00873 | 292 | Gene3D | WRKY domain | 197 | 273 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Pumo10g00873 | 292 | SMART | WRKY_cls | 213 | 273 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Pumo10g00873 | 292 | Pfam | Plant zinc cluster domain | 167 | 211 | IPR018872 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pumo10g00873 | Pumo-Chr10 | 11481196 | 11483027 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pumo10g00873 | 1 | 291 | WRKY Transcription Factor Family | AT2G24570 | 57.895 | 2.63e-108 | 315 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | WRKY | Pumo10g00873 | WRKY | 4.7e-26 | CL0274 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pumo10g00873 | - | - | gmx:100127394 | 426.402 |