Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00864 ATGCTTGCTGATCCAAAGGAGGCACGAGCTGGTATCAGGGAGGTCCACTTTCTTCCATTCAATCCTGTGGACAAGAGGACTGCTCTTACTTACATTGATTCTGATGGAAGTTGGCATCGATCTAGCAAAGGTGCTCCTGAGCAGATATTGAACCTATGCAACTGCAAAGAGGATGTCAGGAAAAGGGTTCATGGAGTGATTGACAAGTTTGCAGAGCGTGGACTCCGTTCTTTAGGTGTTGCTAGACAGGAAATACCTGAGAAAAACAAGGATAGTCCTGGTGCACCATGGCAATTTGTTGGTCTGCTACCACTTTTTGATCCTCCAAGGCACGATAGTGCAGAAACCATCACAAGAGCTCTGAACCTTGGTGTGAATGTTAAGATGATTACTGGTGATCAGCTTGCCATTGCAAAAGAAACTGGCCGAAGGCTTGGGATGGGAACAAACATGTACCCATCTTCTTCATTGCTTGGCCAAAGCAAGGATGCTGCTGTTTCAGCTGTTCCAGTTGATGAGTTGATTGAGAAGGCTGATGGATTTGCTGGAGTATTTCCTGAACACAAATATGAAATCGTGAAGAGGCTGCAAGAGAGGAAGCATATTTGTGGAATGACAGGTGATGGTGTCAACGATGCTCCTGCATTAAAGAAAGCAGACATTGGAATTGCTGTTGCTGATGCTACAGATGCTGCTAGAGGTGCTTCTGACATTGTCCTCACTGAACCTGGTCTGAGTGTCATTATTAGTGCAGTGCTCACCAGCAGGGCAATTTTCCAAAGGATGAAGAATTATACTATCTATGCTGTGTCAATCACCATTCGTATAGTGTTTGGTTTCATGTTTATTGCATTGATTTGGAAATTTGATTTTGCACCCTTCATGGTCTTGATTATTGCCATACTAAACGATGGTACCATCATGACAATATCCAAGGATCGAGTGAAACCATCTCCAATGCCAGACAGCTGGAAGCTGAGGGAGATATTTGCCACTGGTATTGTGCTAGGAAGTTACTTGGCACTAATGACAGTAGTATTTTTCTGGCTCATGAAGGATACCGACTTCTTCTCGGACAAGTTCGGTGTGAGGTCCATAAGAAATAGCCCCGGAGAAATGATGGCAGCCCTGTACCTACAAGTCAGTATTATAAGTCAAGCACTAATTTTTGTCACAAGGTCCCGCAGCTGGTCCTATGTTGAAAGACCTGGTCTTCTCCTACTGAGTGCTTTTATGATTGCACAACTGGTGGCAACTTTTCTAGCAGTATATGCTAACTGGGGCTTCGCAAGAATTCAGGGAATGGGATGGGGTTGGGCTGGTGTCATCTGGCTCTACAGTTTAGTGACATATGTCCCTCTTGATATACTCAAATTCGCAATCCGCTATGTTCTGAGTGGGAAGGCTTGGGATAATCTTTTGGAGAACAAGACTGCCTTCACTACAAAGAAAGACTATGGCAAAGAAGAGAGAGAAGCACAATGGGCAGCTGCACAGAGGACTCTTCATGGTCTTCAGCCACCTGAAACAACCAACCTTTTCAATGACAAAAATAGCTACAGGGAGCTTTCAGAGATTGCTGAGCAAGCCAAGAGACGTGCTGAAGTTGCAAGGCTCAGGGAGCTTCATACTCTGAAAGGACATGTTGAGTCAGTAGTGAAGCTGAAGGGACTTGACATTGATACAATCCAACAGCATTATACAGTTTAA 1710 0.4444 MLADPKEARAGIREVHFLPFNPVDKRTALTYIDSDGSWHRSSKGAPEQILNLCNCKEDVRKRVHGVIDKFAERGLRSLGVARQEIPEKNKDSPGAPWQFVGLLPLFDPPRHDSAETITRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSSLLGQSKDAAVSAVPVDELIEKADGFAGVFPEHKYEIVKRLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMFIALIWKFDFAPFMVLIIAILNDGTIMTISKDRVKPSPMPDSWKLREIFATGIVLGSYLALMTVVFFWLMKDTDFFSDKFGVRSIRNSPGEMMAALYLQVSIISQALIFVTRSRSWSYVERPGLLLLSAFMIAQLVATFLAVYANWGFARIQGMGWGWAGVIWLYSLVTYVPLDILKFAIRYVLSGKAWDNLLENKTAFTTKKDYGKEEREAQWAAAQRTLHGLQPPETTNLFNDKNSYRELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTV 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00864 569 PRINTS H+-transporting ATPase (proton pump) signature 63 81 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pumo10g00864 569 PRINTS H+-transporting ATPase (proton pump) signature 237 262 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pumo10g00864 569 PRINTS H+-transporting ATPase (proton pump) signature 206 222 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pumo10g00864 569 PRINTS H+-transporting ATPase (proton pump) signature 178 194 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pumo10g00864 569 PRINTS H+-transporting ATPase (proton pump) signature 378 399 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pumo10g00864 569 Pfam haloacid dehalogenase-like hydrolase 99 220 - -
Pumo10g00864 569 Gene3D - 207 464 - -
Pumo10g00864 569 Gene3D - 1 101 IPR023299 GO:0000166
Pumo10g00864 569 FunFam Membrane H(+)-ATPase1 46 106 - -
Pumo10g00864 569 NCBIfam HAD-IC family P-type ATPase 181 296 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pumo10g00864 569 SUPERFAMILY HAD-like 32 253 IPR036412 -
Pumo10g00864 569 FunFam ATPase 4 plasma membrane-type 191 433 - -
Pumo10g00864 569 SUPERFAMILY Calcium ATPase, transmembrane domain M 255 465 IPR023298 -
Pumo10g00864 569 PANTHER CALCIUM-TRANSPORTING ATPASE 1 501 - -
Pumo10g00864 569 FunFam Plasma membrane ATPase 99 254 - -
Pumo10g00864 569 Gene3D - 102 176 IPR023214 -
Pumo10g00864 569 Coils Coil 520 540 - -
Pumo10g00864 569 PRINTS P-type cation-transporting ATPase superfamily signature 206 225 - -
Pumo10g00864 569 PRINTS P-type cation-transporting ATPase superfamily signature 123 133 - -
Pumo10g00864 569 PRINTS P-type cation-transporting ATPase superfamily signature 229 241 - -
Pumo10g00864 569 PRINTS P-type cation-transporting ATPase superfamily signature 101 112 - -
Pumo10g00864 569 Gene3D - 518 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00864 Pumo-Chr10 11389598 11393152 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00864 1 569 Primary Pumps ATPases AT2G24520 87.522 0.0 1053
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00864 K01535 - gmx:100785442 1101.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo9g00740 9 14412578 14422767 Pumo10g00864 10 11389598 11393152 PCT