Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00847 ATGGAATATGGTGGCTTGGTGCAGAATGGTGCATATGGGAGCTTCTCAGATTTTTTTGCCCCAGAAACGGATTTGGTGGATGAGCTGTTTGTAGAAGGGTGCTGGCTGGAAACAAGGGGCAGGGAGGGTTCTTCAAAGTCAAACAGGAGCATGGAGGGGCAAATAATTTTCCAAGAAGAATATTCAGAGGCGGTGGGGAAGAGATGGTGGATTGGACCAAGGGCGAATCCGGGGCCATCTTCCTCTGTGAAAGAGAGATTAGTGCTTGCGGTTGGGTACTTGAAAGAATACGCCAAGAATTCCAATGTGCTGATTCAGGTATGGGTGCCCGCACGGAGATCTGCACGTGCTCATCATCATCAGGAGGATTACCCATGCCCATACCCATACCCATACGCCGCCCTTCTTGAGGATGCAACAACAAGATCAGCTTTTCAGTTTCAGGAGGATTGGCTTCATCATCATGACTGGACTCCCAACGTTCGCTTCTTTAGAACTCACGAGTACCCGCGCGTTCAGGTTCAGCAATACGATCTACGTGCTGGATCTCTCGCCCTTCCTGTCTTTGAGAGAAGCACTGCCATATGTCTCGGTGTTGTCGAGATTCTCATGCCCAACAACCCGGACAATGTCTGCCATGCCCTTCAGGGCGTTGATTTTAGAAATACTTCTCATCAGAACTTCATTCCACCAGCCGTGACCGTGAAGGGTTTTGACGAGTTATACCAAAGTGCATTAAATGAGATAGTAGAAGTTTTGACGTGTGTGTGCAAGGCGCATAACTTGCCTTTAGCTCTCACATGGGCTCCCTGCATCCAACAAGGAAAGAGTGGATGTGGGCATTCAAACGATGAGAATTATGTTTCGACTGTGGATCCTGCTAGTTTTGTGGCGGATGTAGAGGTATTGGGATTCCTAGAAGCGTGTTCCGAGTACCATCTTTTGGGGGGGCAAGGAGTAGTTGGGACAGCTTTCACAACCACCAAACCTTGCTTTGCAAATGACATAACTGCCTTCAGCAAGGCTGAATATCCTCTGGCACACCATGCTAACATGTTTGGCTTGCATGCTGCTGTGGCTATTCCACTCCGGAGTGTCTCGGCTGATTTTGTGTTGGAGTTTTTCCTGCCAAAGGATTGCCATGACAGCCAAGAGCAGAAGCAGATGCTCAACTCATTGTCTATGCTAGTACAGCAAGCTTGCCGGAATTTGCATCTTGTCATGGAAAAGGAGGAGGAGGAGGAGGAAGAGGAATTCACGTTGTTGCCGCCGCCTGTTGGTGTAGCGGTACACCATCATCATGATGGCAAAGAAATGGAATCATCATCATCATCCTGGATTGCACATATGATGGAGGCCCAACAGAAGGGGAAAGGTGTCTCGGTGTCCTTGGAATACCTCCAAGAGCCAAAACAAGAGTTCAAAGTGACAACCAACTGCAATGAATTAGGAACAGGCAGTGTTGAGGGTGGGGGAGGAGAAGAATCATATACTGCTTTTGGTGGCCGCCGGGGTGGCAGGAAATCAGGCGACAAGAGACGAACCAAGGCAGAGAAGACTATCAGCTTGCCGGTTCTTCGACAATACTTTGCAGGAAGCCTAAAAGACGCTGCCAAGAGCATTGGCGTATGTCCTACCACTCTAAAAAGGATATGCAGACAACATGGGATTACAAGGTGGCCTTCAAGGAAAATTAAGAAGGTAGGCCACTCTTTAAGGAAACTTCAACTTGTGATCGATTCCGTCCAGGGTGCCGAAGGTGCCATTCAAATTGGCTCCTTCTATACCAGTTTTCCAGAGTTGAGTTCTGCCGATGGTGTTTCTGAATCATCCAAGATCGATAATTCTAAGTATTTTTCTGAAAATAGCTTGTATAACCAAGGAGCTACTACTACTTTCAAATCCCCAACTTCGTCTTGCAGTCAGACTCAGACTTGTAACCCCAGTCCAAACCAACCGACCGATATTATTCTGATGTCAGAGAACCAACCAGTTGGACTTGGTGCATCAATCCAGGTGGAAGGGGAAGCAAAACATTTCACCCACCATCCTATTCAAAGCCTTGAGGCTCTACCTCCCTTGCCCCAATCTACGGGTACTTTTAGAGTCAAAGCTACTTTTGGGGATGAAAAAATCCGTTTTAGCTTGCAACCAAATTGGGGATTCACAGATTTGCAGATGGAGATCGCAAGACGTTTCAATCTAAACGAGATTAGCAACACTCAGCTCAAGTATTTGGATGATGCTCGAGAGTGGGTTCTTTTAACATGCGATGCTGATCTTGAGGAGTGTAAAGACATAAATAGATCATCTCAGAGCCGCACAATTAGACTCTTCCTCTTTCAATCTTCGACTCTAAATCATGCAAATGCATTTCGCGGCACCAGCCCCTCCTCCTAG 2400 0.4725 MEYGGLVQNGAYGSFSDFFAPETDLVDELFVEGCWLETRGREGSSKSNRSMEGQIIFQEEYSEAVGKRWWIGPRANPGPSSSVKERLVLAVGYLKEYAKNSNVLIQVWVPARRSARAHHHQEDYPCPYPYPYAALLEDATTRSAFQFQEDWLHHHDWTPNVRFFRTHEYPRVQVQQYDLRAGSLALPVFERSTAICLGVVEILMPNNPDNVCHALQGVDFRNTSHQNFIPPAVTVKGFDELYQSALNEIVEVLTCVCKAHNLPLALTWAPCIQQGKSGCGHSNDENYVSTVDPASFVADVEVLGFLEACSEYHLLGGQGVVGTAFTTTKPCFANDITAFSKAEYPLAHHANMFGLHAAVAIPLRSVSADFVLEFFLPKDCHDSQEQKQMLNSLSMLVQQACRNLHLVMEKEEEEEEEEFTLLPPPVGVAVHHHHDGKEMESSSSSWIAHMMEAQQKGKGVSVSLEYLQEPKQEFKVTTNCNELGTGSVEGGGGEESYTAFGGRRGGRKSGDKRRTKAEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLRKLQLVIDSVQGAEGAIQIGSFYTSFPELSSADGVSESSKIDNSKYFSENSLYNQGATTTFKSPTSSCSQTQTCNPSPNQPTDIILMSENQPVGLGASIQVEGEAKHFTHHPIQSLEALPPLPQSTGTFRVKATFGDEKIRFSLQPNWGFTDLQMEIARRFNLNEISNTQLKYLDDAREWVLLTCDADLEECKDINRSSQSRTIRLFLFQSSTLNHANAFRGTSPSS 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00847 799 SUPERFAMILY CAD & PB1 domains 696 784 - -
Pumo10g00847 799 ProSiteProfiles RWP-RK domain profile. 507 588 IPR003035 -
Pumo10g00847 799 ProSiteProfiles PB1 domain profile. 700 783 IPR000270 GO:0005515
Pumo10g00847 799 PANTHER PROTEIN NLP8 59 783 IPR045012 GO:0003700
Pumo10g00847 799 SMART PB1_new 700 783 IPR000270 GO:0005515
Pumo10g00847 799 Gene3D - 701 783 - -
Pumo10g00847 799 Pfam RWP-RK domain 521 568 IPR003035 -
Pumo10g00847 799 MobiDBLite consensus disorder prediction 485 516 - -
Pumo10g00847 799 CDD PB1_NLP 701 782 IPR034891 -
Pumo10g00847 799 Pfam PB1 domain 700 782 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00847 Pumo-Chr10 10519883 10522542 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00847 57 792 NLP Transcription Factor Family AT4G35270 46.108 0.0 628
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Pumo10g00847 PB1 9.1e-17 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00847 - - pvu:PHAVU_009G115800g 1171.76