Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00834 ATGTTAATACAAACTTCTCTCCTTAGTTCAGTTGAAGCTGGTCTATGTTATGTATCTGATGATGGGAAAGATGTTCTATTTGACCGGATGCCTAGTGGTGAAACTTGGCAGGTTTGTCTGAAATGCAATAAGTACCCACTTGACTGGTGTAGAAAAGCTGAACCGGTGGAAGAAGATAGAAGGAATGCTGATGATCCTTACAGCTCAAGCTGTCTAGTTAGCTTTGGTCAGCCGTCAACTGCTAGTATAATGACAGAAAATACTACACCTAATATGGTATACAGGAGAAAGAAGCTTCGTAAGGACTCAAATTTCAGGCTAGGGCCAACTAATGTGCAGGCAAGTGCAAACTGCCCTTCAGTCATAAGTTCTGCTGCACATTTATCATCAGCTGAGAATCAGCCAGCTGGTTTTCAAGTTAGGCATGAAATTGAAATGGTTAAAGATCCTACCATGCCTTCAGTCTTATTTGATGGAGTAGCCAAAGATAGCACACATAAAAACTTAGGTATTAACAGTGTAAATGATAGTTGCTCCTCTTCAAAGCCAAATATGGAAATTGAAATGGATGAAACTGGTGAATGCTCCTCCTCCAGTATAATAGTCATGGATTGCACAAGGGAAGAAGTAACAGAAAAGGATTTCTGCATTAATATTTTAAGAAGCCATGGACTTATTAAAGAAGATTCTCTTGTGGCTTCTGGGGAAGATGGTGCCACCACTGGTAATAGCTGCTGTTCCAGGTCATGCAAAATATGTGGTGATTTAGACAGTTCATTGAACATGCTTTTGTGTGATCATTGTGAAGATGCATATCATCCGTCTTGCTACAACCCACGTTTGAAAAAATTACCAATTGATGAGTGGTTTTGTCATTCATGTCTTAAAAAAAGGCAAAAAATTCTCAAGGAGACAGTTATCAGATCACCACCAAGTATCCACAATGAATTGGGCAAATGTAGAACTGCCCCAGTTAAGGCTGAATTGAATCCCATACTGTTGATGTTGAGAGACACCAAGCCCTATACAACTGGTGTGCGAGTTGGTAAAGGTTTTCAAGCAGAAGTTCTTGACTGGTCAGGCCCGAAAAAAAGTGATGAAGATGTCCTTCCCGAACCATTGGAAATTATTCCTTCAGAATTTTATAGATTGCTGCAGGGAGAGAATACGAGAAATCCTACTAAACTTAGTTCCATTGGTAATTGGATTCAATGTCAGGAGTTTATAGATAGAGCCAATGGAACTATATGTGGAAAATGGCGCAGGGCTCCTCTTTTTGAAGTTCAAACTGATGACTGGGAGTGCTTTTGTGCTATCCATTGGGATCCATCTCATGCTGATTGTGCTGTACCTCAGGAGCTTGAAACAGATCAAGTACAGAAGCAACTGAAGTATATAGAAATGGTATGCGTAAGCTGCATAATTTTTATTATTGTATTTATGTTAAAGGAATATTTAGTGATTGATTAG 1470 0.3939 MLIQTSLLSSVEAGLCYVSDDGKDVLFDRMPSGETWQVCLKCNKYPLDWCRKAEPVEEDRRNADDPYSSSCLVSFGQPSTASIMTENTTPNMVYRRKKLRKDSNFRLGPTNVQASANCPSVISSAAHLSSAENQPAGFQVRHEIEMVKDPTMPSVLFDGVAKDSTHKNLGINSVNDSCSSSKPNMEIEMDETGECSSSSIIVMDCTREEVTEKDFCINILRSHGLIKEDSLVASGEDGATTGNSCCSRSCKICGDLDSSLNMLLCDHCEDAYHPSCYNPRLKKLPIDEWFCHSCLKKRQKILKETVIRSPPSIHNELGKCRTAPVKAELNPILLMLRDTKPYTTGVRVGKGFQAEVLDWSGPKKSDEDVLPEPLEIIPSEFYRLLQGENTRNPTKLSSIGNWIQCQEFIDRANGTICGKWRRAPLFEVQTDDWECFCAIHWDPSHADCAVPQELETDQVQKQLKYIEMVCVSCIIFIIVFMLKEYLVID 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00834 489 ProSiteProfiles Zinc finger CW-type profile. 396 456 IPR011124 GO:0008270
Pumo10g00834 489 ProSiteProfiles Zinc finger PHD-type profile. 247 297 IPR019787 -
Pumo10g00834 489 SMART PHD_3 249 295 IPR001965 -
Pumo10g00834 489 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 171 306 IPR013083 -
Pumo10g00834 489 PANTHER BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 1A 243 305 IPR047171 GO:0006338
Pumo10g00834 489 FunFam RING/FYVE/PHD zinc finger superfamily protein 235 316 - -
Pumo10g00834 489 Gene3D - 400 465 - -
Pumo10g00834 489 Pfam PHD-finger 250 296 IPR019787 -
Pumo10g00834 489 SUPERFAMILY FYVE/PHD zinc finger 248 301 IPR011011 -
Pumo10g00834 489 FunFam uncharacterized protein LOC106759733 isoform X4 400 465 - -
Pumo10g00834 489 ProSitePatterns Zinc finger PHD-type signature. 250 294 IPR019786 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00834 250 295 C2H2 Transcription Factor Family AT3G01460 43.478 1.06e-06 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pumo10g00834 PHD 2.9e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00834 - - gmx:100813057 889.026