Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00826 ATGGTGAGTGGAGAGCACAATCTGGCAATGCAACTGCCAAGCCCAACAATGAAGCAACCAGCTGTTTCGGATCAGAGCCTGTCCAAGAATCACATCTCTGTCTCACCCAAAGCTAATAAAGCTGCTGGGAGAAGTAGGAGGAAAAACAGTGGTCGTTCTTCCTTGCCATCTGCATATGATCACATGAATACTAATAGTCCTTACTACAAGGGTCTAACTGACCAATCCCTTGCTATCCCTCAGCCTAAGCCTCAGCCTCAGCCTCATACCCCTACTACCACTGATTACCTTCTTTCTAGTCCATATTATAAAGGTCTTCTTGCTCTTGGTCCTTGGACCCCTCACAACCATCCTATTCCTTTTCCTCCCAACTACTACCTTTCATACCCTTCCAGTCCTTACTATAGAGGTCTTCTTACAGATTACACCCTTGTACTTCATGCATCACCACCTCCTCCTTTCAGTAACTTGCAATCTTCTATCAAAACTAACCCAGGAGGAGGAGGACCCACCAGTTCTTCATCACTCCCAAACATCAAGACTGACTTTACTTTGGAGGACTTGATTATCGATGCTGACTTTCTTACTAAACAAAGTCAAGTTGAGAATTATGCATTAGAAGAAGAAATTGCTGTGGAGGAGATCATGGATCAAGAGAAGGAAGCAGAATTGGAGGAGATGGTGATTGAAGAGAAGCCATTGAGGGAGAGTGTATTATTAGAAGAAGAAACAATGTTGTTGGAGGAAAAGGAAATGATGGGTGATGAAGAGAAGCCATTGAGGGAGAGAGTATCAGAAACAAGCGACCATGATGTGGAGATGGAGGAGGAAGAGGAACTCAAAGACTGTGAAAAGGAGAAGAAGGCCTTGCCTGTTTCTGTTTCTGTTTCTGAATCTGAATCTGAATCACAGTGTGAAGAGGGAGGAAATCTCTACCAGTATACATGGGCAGCCAAATACCAGCCCATGTCCTTAGATGACTTCATCTGCAACAAAGACAAAGCACTTCAGCTCAAAGCAAAGGTAAAAGAGGGTTGTGGCTGCAGTCATTTTATATTTGAAGGACCACCAAGTGTTGGAAAGAGATCCATGATACGGGCTATGCTTCGAGAGGTATTTGGCGCCGACAGGGTGCAGGTCATTGAAGAATGTAGAAACTTCAATTTGAAGGGAGAAATGGTTGACAATCTCCAAGTGCGCGTGAAGAAATCACTCCATCATGTTGAGGTGAATCTGTCAGAGACAAAGGGATATGAAAAGCATGTAATAGTTGATTTATTCAAGGAAACATATGGTCAGGTCATAAATAACTCAGAGCCTTGTTGCCCAGAAAACTGCAAAGCAATCATTTTGTATGAGGCCGAGAAGCTATCCATAGAATCCTTGTTGTATATTAAGTGGCTACTAGAAAAGTACAAAGGCTGTAATAAGGTGTTCTTTTGTTGCTCTGATGAATCAAAGCTCCAACCTGTCAAGCCACTCTGCATCACTGTCCAACTTTCATCACCATCAACCCAAGAGCTTGTTCAGATTTTGGAAAATATTGGAAAAGAAGAAGGGATAAAATTATCACGCGACTTAGTCGAGAAGATAATTTTGAGGTCCAAAAACAATCAATGCCAGGCCATTCGTTCGTTGGAGGCCACTTGCCGAAACAAGGATGCTGTCAAAGACGACGATTTAATTCTAACTGGGTGGGAGGAAGATATTTTGAATATTGCCAAAAAAATAATCGAAGAGCAAAGTCCACGACAGTTGTACGTCATTCGTAGGAAGCTTCAAAGTCTTATGATTCATGATGTTCCTCCTGACTTTATTTACAAGTCTTTGGTACCAGAGTTAACGAATCTAGTCGATGAGTCGCTACGAGCAGGGGTTGCCAAACTCGACAAGGAGTTCATTAGACCTAGTGAAATCAAATTTGAAACTATGAAGCAGTTCGGTCATGCTCACAAACAAGCGGAATCGGATGGGAATAAGAACAATGACTCAACCAAACAGAATAGGTTAACTTACTTGAAAGTTGAAGAGTTTATAGCGAAATTCATGAGCTGGTACAAGAATTCATCTGAAAAAGGCAAAAAGCAGTAA 2091 0.4209 MVSGEHNLAMQLPSPTMKQPAVSDQSLSKNHISVSPKANKAAGRSRRKNSGRSSLPSAYDHMNTNSPYYKGLTDQSLAIPQPKPQPQPHTPTTTDYLLSSPYYKGLLALGPWTPHNHPIPFPPNYYLSYPSSPYYRGLLTDYTLVLHASPPPPFSNLQSSIKTNPGGGGPTSSSSLPNIKTDFTLEDLIIDADFLTKQSQVENYALEEEIAVEEIMDQEKEAELEEMVIEEKPLRESVLLEEETMLLEEKEMMGDEEKPLRERVSETSDHDVEMEEEEELKDCEKEKKALPVSVSVSESESESQCEEGGNLYQYTWAAKYQPMSLDDFICNKDKALQLKAKVKEGCGCSHFIFEGPPSVGKRSMIRAMLREVFGADRVQVIEECRNFNLKGEMVDNLQVRVKKSLHHVEVNLSETKGYEKHVIVDLFKETYGQVINNSEPCCPENCKAIILYEAEKLSIESLLYIKWLLEKYKGCNKVFFCCSDESKLQPVKPLCITVQLSSPSTQELVQILENIGKEEGIKLSRDLVEKIILRSKNNQCQAIRSLEATCRNKDAVKDDDLILTGWEEDILNIAKKIIEEQSPRQLYVIRRKLQSLMIHDVPPDFIYKSLVPELTNLVDESLRAGVAKLDKEFIRPSEIKFETMKQFGHAHKQAESDGNKNNDSTKQNRLTYLKVEEFIAKFMSWYKNSSEKGKKQ 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00826 696 MobiDBLite consensus disorder prediction 251 280 - -
Pumo10g00826 696 Gene3D - 565 686 - -
Pumo10g00826 696 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 313 561 IPR027417 -
Pumo10g00826 696 MobiDBLite consensus disorder prediction 9 35 - -
Pumo10g00826 696 Gene3D - 314 503 IPR027417 -
Pumo10g00826 696 Gene3D - 504 564 - -
Pumo10g00826 696 MobiDBLite consensus disorder prediction 1 95 - -
Pumo10g00826 696 MobiDBLite consensus disorder prediction 48 72 - -
Pumo10g00826 696 SUPERFAMILY post-AAA+ oligomerization domain-like 565 628 IPR008921 GO:0003677|GO:0006260
Pumo10g00826 696 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 315 653 - -
Pumo10g00826 696 MobiDBLite consensus disorder prediction 156 178 - -
Pumo10g00826 696 MobiDBLite consensus disorder prediction 251 270 - -
Pumo10g00826 696 FunFam Replication factor C subunit 3 314 503 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00826 Pumo-Chr10 10306483 10313366 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00826 316 688 Core DNA Replication Machinery Family AT5G27740 29.973 2.84e-45 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00826 K10756 - gmx:102664389 974.926