Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00823 ATGGTGGTTGGGCAACTTGTTCCTTCGAATTTGTTCCTCAATCGTTCTGCTACCACACTCATACCCAGACATAGACAGCGTCTCTCTGCCTCCGCCAATGCCAATCACGCAACCAATAAGGAATCTCCATTCTCAAGTTTTGGAAGACTCAAAGTGAAGACTCGAAAGGAGCAAAGCCAAAGCCAAAGACATGAAGATGATGATGTACCCCACAGACCCAGACGTTCTCAGTCTCGAGGATGGGATATCATTCCCAATTATACGCGAGAAAGAGAAAGCAAATCAGCGACCGACACCAACTTTTTCAGTCTCAAGTCCTTTAAAGAAATAGGGTGCAGTGACTATATCATTCAATCCCTCCAAAAACTCTCGTTCACTCGCCCTTCCCATGTACAGGCCATGGCATTTGCACCTGTTGTTAGTGGAAAAACTTGTGTCATAGCTGACCAAAGTGGTTCTGGAAAGACCTTAGCTTATCTTGCACCAATCATTCAGCGTCTTAGACAAGAGGAACTTGAAGGACGTAGTAAATCCTCTTCACAAGCTCCTAGACTCCTTGTACTCGCACCAACAGCTGAGTTAGCTTCTCAGGTCTTAGATAATTGTCGCTCTTTGTCAAAATCTGGGCTTCCCTTCAAATCTATGGTTGTCACAGGAGGTTTTCGACAAAAAACTCAACTGGAAAATTTACAGCAGGGAGTTGATGTCTTAATAGCTACACCTGGCCGTTTTTTGTTTCTCATAAATGAAGGCTTCTTGCACTTGACAAATCTAAGATGTGCTGTGTTGGATGAGGTAGATATACTCTTTGGTGATGAGGACTTCGAAGTGGCTCTTCAATCCTTGATCAATTCTTCACCGGTTGACACACAGTATTTATTTGTGACTGCAACTTTACCAAAAAATGTTTACACCAAATTGGTTGAAGTTTTTCCCGATTGTGAAATGATTATGGGGCCTGGTATGCACCGAATAAGTTCTCGCCTTGAAGAGATTATAGTAGATTGCAGTGGAGAAGATGGACAAGAAAAAACTCCTGATACAGCATTTTTGAACAAGAAAACTGCACTTCTGCAGCTTGTGGAGGAAAGTCCTGTCCCAAGAACTATTGTGTTCTGCAACAAAATTGAAACATGCAGAAAAGTTGAAAATTCATTAAAGCGTTTTGATAGAAAAGGAAATCACGTGCAAGTTCTACCCTTCCATGCTGCCATGACACAAGAATCACGGCTTGCTAGTATGGAAGAGTTTACACGTTCTCCCTCAAAAGGAGTCTCCCAGTTTATGGTTTGCACCGACAGAGCATCAAGGGGAATAGACTTCGCAGGAGTGGATCATGTCATACTCTTTGACTTCCCACGTGATCCAAGTGAATATGTACGGCGTGTTGGAAGAACAGCCAGAGGTGCCAAGGGAGTAGGCAAGGCATTTATCTTTGTGGTTGGCAAGCAAATATCCCTTGCACGCAAAATAATGGAAAGAAATCAGAAGGGTCACCCACTACATGATGTGCCTTCGGCTTATTAG 1527 0.4316 MVVGQLVPSNLFLNRSATTLIPRHRQRLSASANANHATNKESPFSSFGRLKVKTRKEQSQSQRHEDDDVPHRPRRSQSRGWDIIPNYTRERESKSATDTNFFSLKSFKEIGCSDYIIQSLQKLSFTRPSHVQAMAFAPVVSGKTCVIADQSGSGKTLAYLAPIIQRLRQEELEGRSKSSSQAPRLLVLAPTAELASQVLDNCRSLSKSGLPFKSMVVTGGFRQKTQLENLQQGVDVLIATPGRFLFLINEGFLHLTNLRCAVLDEVDILFGDEDFEVALQSLINSSPVDTQYLFVTATLPKNVYTKLVEVFPDCEMIMGPGMHRISSRLEEIIVDCSGEDGQEKTPDTAFLNKKTALLQLVEESPVPRTIVFCNKIETCRKVENSLKRFDRKGNHVQVLPFHAAMTQESRLASMEEFTRSPSKGVSQFMVCTDRASRGIDFAGVDHVILFDFPRDPSEYVRRVGRTARGAKGVGKAFIFVVGKQISLARKIMERNQKGHPLHDVPSAY 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00823 508 SMART helicmild6 380 470 IPR001650 -
Pumo10g00823 508 MobiDBLite consensus disorder prediction 29 87 - -
Pumo10g00823 508 MobiDBLite consensus disorder prediction 29 45 - -
Pumo10g00823 508 SMART ultradead3 124 332 IPR014001 -
Pumo10g00823 508 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 356 508 IPR001650 -
Pumo10g00823 508 Gene3D - 54 317 IPR027417 -
Pumo10g00823 508 Gene3D - 326 502 IPR027417 -
Pumo10g00823 508 Pfam DEAD/DEAH box helicase 130 303 IPR011545 GO:0003676|GO:0005524
Pumo10g00823 508 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 136 317 IPR014001 -
Pumo10g00823 508 CDD DEADc 116 303 - -
Pumo10g00823 508 CDD SF2_C_DEAD 329 480 - -
Pumo10g00823 508 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 105 133 IPR014014 GO:0003724
Pumo10g00823 508 MobiDBLite consensus disorder prediction 50 78 - -
Pumo10g00823 508 Pfam Helicase conserved C-terminal domain 353 469 IPR001650 -
Pumo10g00823 508 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 33 506 - -
Pumo10g00823 508 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 140 481 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00823 Pumo-Chr10 10273674 10277186 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00823 104 491 Eukaryotic Initiation Factors Gene Family AT3G19760 27.763 3.20e-31 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00823 K13179 - gmx:100784377 863.218