Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00815 ATGTCGAAGGAAGTGAGCGAAGCAGGGCAGCAGCAAAGGAAGGACTACGTAGACCCTCCGCCAGCCCCTCTCATCGACTTGGCCGAGATTAAGCTCTGGTCCTTCTACAGAGCCCTCATCGCCGAGTTCATCGCCACACTCCTCTTCCTCTACGTCACCGTCGCCACCGTCATCGGCCACAAGAAACAGACCGGACCTTGCGACGGCGTTGGCCTTCTCGGCATCGCATGGGCCTTTGGTGGCATGATCTTCGTCCTCGTCTACTGCACCGCCGGCATTTCTGGTGGACACATCAACCCTGCGGTGACTTTTGGCCTGTTCCTGGCTCGCAAGGTGTCTCTGATTCGTGCCGTTTTCTACATGGTAGCACAGTGTCTGGGTGCTATCTGCGGTGTTGGGCTGGTGAAGGCCTTCATGAAGCACTCCTACAACTCCCTCGGCGGCGGTGCTAACTCCGTCAACTCTGGCTACAACAAGGGAACTGCTCTGGGTGCCGAGATTATCGGCACCTTCGTGCTTGTCTACACCGTTTTCTCAGCCACCGACCCCAAGAGAAGCGCGCGTGACTCCCATGTCCCCGTGTTGGCTCCATTGCCTATTGGGTTTGCCGTTTTCATGGTTCACTTGGCCACCATACCCATCACTGGTACCGGCATTAACCCAGCTAGGAGCTTCGGTGCTGCTGTTATTTACAACAATGGCAAAGTTTGGGATGACCATTGGATATTCTGGGTTGGGCCATTCGTGGGAGCGTTGGCGGCGGCGGCATACCACCAGTACATACTGAGAGCAGCGGCTATTAAGGCCTTGGGTTCCTTCAGGAGCAACCCTACCAACTAA 840 0.5619 MSKEVSEAGQQQRKDYVDPPPAPLIDLAEIKLWSFYRALIAEFIATLLFLYVTVATVIGHKKQTGPCDGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVFYMVAQCLGAICGVGLVKAFMKHSYNSLGGGANSVNSGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNGKVWDDHWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRSNPTN 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00815 279 CDD MIP 37 261 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo10g00815 279 Pfam Major intrinsic protein 30 257 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo10g00815 279 SUPERFAMILY Aquaporin-like 29 263 IPR023271 -
Pumo10g00815 279 Gene3D Glycerol uptake facilitator protein. 22 279 IPR023271 -
Pumo10g00815 279 ProSitePatterns MIP family signature. 97 105 IPR022357 -
Pumo10g00815 279 NCBIfam MIP family channel protein 41 257 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo10g00815 279 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 4 268 IPR034294 -
Pumo10g00815 279 FunFam Probable aquaporin PIP1-2 22 277 - -
Pumo10g00815 279 PRINTS Major intrinsic protein family signature 79 103 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo10g00815 279 PRINTS Major intrinsic protein family signature 201 223 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo10g00815 279 PRINTS Major intrinsic protein family signature 37 56 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo10g00815 279 PRINTS Major intrinsic protein family signature 241 261 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo10g00815 279 PRINTS Major intrinsic protein family signature 165 183 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pumo10g00815 279 PRINTS Major intrinsic protein family signature 116 135 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00815 Pumo-Chr10 10193638 10195338 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00815 1 279 Major Intrinsic Protein MIP AT4G35100 89.286 0.0 510
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00815 K09872 - gmx:100306103 545.428