Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00803 ATGGGAAGGTCCCCTTGTTGTGAGAAAGCACACACAAACAAAGGTGCATGGACCAAAGAAGAAGATGATCGCCTCATAGCTTACATTAGAGCTCACGGTGAAGGATGCTGGCGCTCTCTCCCCAAAGCCGCGGGCCTTCTACGCTGCGGCAAGAGTTGTCGTCTCCGATGGATCAACTATCTCCGCCCTGACCTCAAACGCGGCAATTTCACCGAAGACGAAGATGAAATCATCATCAAACTCCATAGCCTCCTTGGCAACAAGTGGTCTCTAATAGCTGGAAGATTGCCGGGGAGAACAGACAATGAGATAAAGAATTACTGGAATACTCACATAAGAAGGAAGCTTTTGAGCAGAGGAATTGACCCTGCAACTCACAGGCCTCTCAACGATTCTTCTCATCAAGTTCAAGAACCACCTGCCACCGCCACAATATCTTTTGCTCCTAAACAAGAGGTAAAAGACGAGGTGTTTGTGGAGATTATTAATAAAACATCGGTACGCTGCCCCGACTTGAACCTTGAGCTAACCATTAGTCCTCCCCATCAACCTGAATTGAAGAGTCTTGGGAGAAACCTTTGCTTTGGCTGCAGTTTGGGTTTGCAGAATAGCAAAGATTGTAGCTGTGGGGTCAATGGTAACTTGGGCAACACTAGTAGTGCCAACGGTGCTACTACTGGCTATGATTTCTTGGGCTTGAAAACCACCGTTTTGGATTACAGAACCTTGGAAATGAAATGA 741 0.4683 MGRSPCCEKAHTNKGAWTKEEDDRLIAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEDEDEIIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLSRGIDPATHRPLNDSSHQVQEPPATATISFAPKQEVKDEVFVEIINKTSVRCPDLNLELTISPPHQPELKSLGRNLCFGCSLGLQNSKDCSCGVNGNLGNTSSANGATTGYDFLGLKTTVLDYRTLEMK 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00803 246 CDD SANT 69 112 IPR001005 -
Pumo10g00803 246 FunFam MYB transcription factor MYB48 69 168 - -
Pumo10g00803 246 SMART sant 66 114 IPR001005 -
Pumo10g00803 246 SMART sant 13 63 IPR001005 -
Pumo10g00803 246 CDD SANT 16 61 IPR001005 -
Pumo10g00803 246 Gene3D - 14 66 - -
Pumo10g00803 246 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pumo10g00803 246 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Pumo10g00803 246 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pumo10g00803 246 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pumo10g00803 246 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Pumo10g00803 246 FunFam MYB-related transcription factor 13 66 - -
Pumo10g00803 246 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 138 - -
Pumo10g00803 246 Gene3D - 68 140 - -
Pumo10g00803 246 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pumo10g00803 246 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00803 Pumo-Chr10 10024936 10026307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00803 1 246 MYB Transcription Factor Family AT4G38620 60.638 1.65e-109 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo10g00803 Myb_DNA-binding 3.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00803 K09422 - mnt:21407715 376.711