Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00796 ATGGACGGTGACGACAACCCTTCTTCACTTGCATGGCTTTGGGTCATTGAAGCCCTATCAGCTTCCAAAGAAATCACCATTCCCACTTTGCAGGGTTTGATTGATGCAGCACCTGTGGGGCATGATAAATTTAGTGAAAATACAAGGGAATGGGTTGCCTTGAGGTGTTTGGAGAAACTGTCCACTCTTGTGGTTGACCCTGAAGCTTCTTCTACCTTGAATTCCAGAGTTGGATTCGATTATTCTCGGTGTTGTGAAGATGTCCTCCAAGAAATATTGGACGAGCAGATCCCATTATCAAATCTTAAAATGGCTGGAGCAGAGCTTTGGAAATGGAATGTTTACCCGTTTATGAAGCACAAAAGAGCTGGCACTTTTAAATGTCACTTAGAGCAGCTGAGAGAAACAATCTTGGAAGGTACTAATCCACATACCGATTACTTGAAAGAAAGGAGTGGATTATTTCCTCAGAATAATAAATCTTCAAAAGAACACTCGCTTGATAATAAGAGTAGTAGGGAAAAGCAATTTTGTGTAAACGAAGGTGATGATTTCTGTAGAAATTCAAAGAGGATTAAATGTTCTGCATATACAGAAAAGCCGGCTCCTTGTGATATTTGTGATGCAAATGTTGTCCAACCAGTGGTTCCTGAATATTGTCTTGGTATGACAACCACCATTATGCCTCAGCATACCTCTGTAGCTGAACCTTGCAATAATACATCTATGGATGAAGCCGATGATATTGTACATCATGCCATTCCAACAAATGATGCTAATGCAGAAAAAAATCAGCATATGATTAATTTACGCCAATCCAAACAGACAGAACCTGATATTACATCTTTAAATCTCTCTCAGAAGCTAGTTGCTAGTGATAAAACTGTTGTTGATATGGTTAATGGCTGTGGAGCAGAGTTATCAAGTGATAGTGATGGATATCACAATGAAAAAAATGATCTTGAAGCAGAAAAACATGAATTCCTGCGCTCCCACTGCACGGTTGATCAAGATTTCTCAGCAATGACTGAATCAACAGAACAAAATCTTTGCATGAAGTGTAATGAAGGTGGCCAATTACTGGCTTGTAAAACAACTACTTGCCCATTGATGGTGCATAAAAACTGTCTAGGTGCACCTGCTCAATTGGATGCAAAGGGCAACTTTTTTTGCCCATTTTGTGCTTATTCTCATGCTATTTCAGAATATCTTGAAGCTAAGAAAAATGCTTCCTTGTCAAGGAAAGAAGTAGCTATCTTTATTGGTAAAGGTAAACTGAATCAAGCTGCAGAACTTGTTCATGAATTTCATAGACAAGAGCATTGTTTTTCAAGAAAGAGTATTAAGTGTGAACATATTCATGTCAAAAACCACAAAGATGATCAGTTAACAGGGTGTGAAGACAACAGAGAAGATCATGTTGGCGAGCATGCAAATGAAGCCAAAAATCTTCAATTTGAAAGAAGTCAGCAAGAAGCCCCTGTTTCATGCATCCATTCATCATGCAGAGAAAAGGAAAATGTAAATAATGGATCAGTTGAAGTTTTAAGAGAAGAGGAAATAGGTGAAATGCCAAATGCAAAGAGCTTAACTGGCGGAAGAGTTGAAGAAAATGAAGTGCCAACTGACCATGTAGATGGACATGTTGGTGATAAATTTACCAGTGAAAAAACAAATATTGCCCCTGTTAATCAAAGCAATGCTGGAGAAGAAGTTCCACAAGAAATGACAAAACAGCACAATATTGATGGAACAATAGAGCCAGTTTGTGCACATGATACTGGAAAAGAGAAAATTTCTGAAGATGAATGTGAAAAGCATAGTATTCCTAGATACTCCAATAGATTCCGTAAACATGAAACACAATGCAAACCCCAAGCAAGCCAAGTATTTCGGGGCAATCGGTTAAGACGAATGAAAATTCCATGGACAGCTGAGGAGGAAGAGCTGATAAAGGAGGGAGTGCAGAAGTTTGGTTTGAATGACCCAAAGAAATGGAAAAAAATTTTGGAATTTGGTTCTCACTTGTTTGATAAGGATGGTAAGCATCGTACACCACTAGACCTGAAGGATAAATGGAGGAACATGTGCAAAGCTCACTCAAAATCAAAATGA 2115 0.3858 MDGDDNPSSLAWLWVIEALSASKEITIPTLQGLIDAAPVGHDKFSENTREWVALRCLEKLSTLVVDPEASSTLNSRVGFDYSRCCEDVLQEILDEQIPLSNLKMAGAELWKWNVYPFMKHKRAGTFKCHLEQLRETILEGTNPHTDYLKERSGLFPQNNKSSKEHSLDNKSSREKQFCVNEGDDFCRNSKRIKCSAYTEKPAPCDICDANVVQPVVPEYCLGMTTTIMPQHTSVAEPCNNTSMDEADDIVHHAIPTNDANAEKNQHMINLRQSKQTEPDITSLNLSQKLVASDKTVVDMVNGCGAELSSDSDGYHNEKNDLEAEKHEFLRSHCTVDQDFSAMTESTEQNLCMKCNEGGQLLACKTTTCPLMVHKNCLGAPAQLDAKGNFFCPFCAYSHAISEYLEAKKNASLSRKEVAIFIGKGKLNQAAELVHEFHRQEHCFSRKSIKCEHIHVKNHKDDQLTGCEDNREDHVGEHANEAKNLQFERSQQEAPVSCIHSSCREKENVNNGSVEVLREEEIGEMPNAKSLTGGRVEENEVPTDHVDGHVGDKFTSEKTNIAPVNQSNAGEEVPQEMTKQHNIDGTIEPVCAHDTGKEKISEDECEKHSIPRYSNRFRKHETQCKPQASQVFRGNRLRRMKIPWTAEEEELIKEGVQKFGLNDPKKWKKILEFGSHLFDKDGKHRTPLDLKDKWRNMCKAHSKSK 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00796 704 CDD SANT_TRF 641 698 - -
Pumo10g00796 704 SMART sant 639 699 IPR001005 -
Pumo10g00796 704 MobiDBLite consensus disorder prediction 149 172 - -
Pumo10g00796 704 SUPERFAMILY Homeodomain-like 637 698 IPR009057 -
Pumo10g00796 704 SUPERFAMILY FYVE/PHD zinc finger 344 398 IPR011011 -
Pumo10g00796 704 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 342 403 IPR013083 -
Pumo10g00796 704 Gene3D - 634 700 - -
Pumo10g00796 704 ProSiteProfiles Myb-like domain profile. 635 697 IPR001005 -
Pumo10g00796 704 SMART PHD_3 350 395 IPR001965 -
Pumo10g00796 704 ProSiteProfiles Zinc finger PHD-type profile. 348 397 IPR019787 -
Pumo10g00796 704 Pfam Myb-like DNA-binding domain 642 695 IPR001005 -
Pumo10g00796 704 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 642 701 IPR017930 -
Pumo10g00796 704 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 11 700 - -
Pumo10g00796 704 ProSitePatterns Zinc finger PHD-type signature. 351 394 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00796 Pumo-Chr10 9924785 9930624 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00796 640 697 Single Myb Histone (SMH) Gene Family AT1G72740 49.180 5.33e-09 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pumo10g00796 Myb_DNA-binding 3.2e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00796 - - gmx:102661885 1014.99