Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00795 ATGGATCACGAGATTGATGTTCCTCCATTCTTTGTCTGCCCCATTTCGTTAGAAATGATGAAGGATCCAGTGACCGTCTCCACGGGCATGACCTACGACCGCGAAAGCATCGAAACGTGGCTGTTTTCTAAGAAAAACAAGACATGCCCGGTCACCAAACAACCCTTGTTAGATTACACGGATCTCACCCCAAACCACACCCTTCGGAGACTCATTCAAGCCTGGTGTACCATGAACGCTTCTCACGGCATCCAAAGGATCTCAACCCCTAAACCCTCCGTTAACAAAATACAGATTTCAAAGCTTCTCAAAGACGCTTCTCATTCCCCTCTCGCATCCCTCCCAAGCCTCAAATCCATCGCTTCAGGAAGCGAAACAAACAAACGCTGCATGGAAGCCGCGGGTGCCGTTGAATTCCTAGCATCAATTGTAATAATGAACGACAACAACATCGATTCTGACCCAAGTGCAAGCGATGAAGCATTGAGCCTGCTTCATAATCTTCATTTATCTGAACAAGGGTTGAGGACTCTCTTGAGCTTCAAAAACGGAGACTTTATTCAGTCTTTAACAAGAGTCTTGCGGAAGGGGATCAAAGCTGTGGAAGCAGGAACCGTTCATGTTTTGATAGAACATCTTCTTGATTGCAAGGACAGAAAACCTTGTGAGATGATGCTAGTGTTGTTGGATATGCTGTGCCAGTGTGCTGAGGGAAGAGCACAACTTTTGAGTCATGGAGCAGGTCTTGCCATTATTTCCAAAAAGATTCTGAGAGTTTCGACATTGGCGAATGATAGGGCTGTTAGGATTCTTCTGTCTGTTTCCAAGTTCTCTGCCACTCCATATGTTGTTCAAGAAATGCTGAAACTGGGTGTGGTCGCAAAATTGTGCTTGGTGCTTCAGGTGGATAGTGGAACCAAGGCTAAAGAAAAAGCAAGAGAGATACTCAAATTGCATGTTCGGGCGTGGAGGAATTCTCCATGCATACCCAGCAATTTGCTTGCTTCATACCCGGCTTATGTGTGA 1026 0.4571 MDHEIDVPPFFVCPISLEMMKDPVTVSTGMTYDRESIETWLFSKKNKTCPVTKQPLLDYTDLTPNHTLRRLIQAWCTMNASHGIQRISTPKPSVNKIQISKLLKDASHSPLASLPSLKSIASGSETNKRCMEAAGAVEFLASIVIMNDNNIDSDPSASDEALSLLHNLHLSEQGLRTLLSFKNGDFIQSLTRVLRKGIKAVEAGTVHVLIEHLLDCKDRKPCEMMLVLLDMLCQCAEGRAQLLSHGAGLAIISKKILRVSTLANDRAVRILLSVSKFSATPYVVQEMLKLGVVAKLCLVLQVDSGTKAKEKAREILKLHVRAWRNSPCIPSNLLASYPAYV 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00795 341 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 88 IPR013083 -
Pumo10g00795 341 ProSiteProfiles U-box domain profile. 6 82 IPR003613 GO:0004842|GO:0016567
Pumo10g00795 341 SUPERFAMILY RING/U-box 4 82 - -
Pumo10g00795 341 CDD RING-Ubox_PUB 8 58 IPR045210 -
Pumo10g00795 341 Pfam U-box domain 7 79 IPR003613 GO:0004842|GO:0016567
Pumo10g00795 341 PANTHER WDSAM1 PROTEIN 3 197 IPR045185 GO:0061630
Pumo10g00795 341 SMART Ubox_2 10 75 IPR003613 GO:0004842|GO:0016567
Pumo10g00795 341 FunFam RING-type E3 ubiquitin transferase 1 85 - -
Pumo10g00795 341 SUPERFAMILY ARM repeat 116 314 IPR016024 -
Pumo10g00795 341 Gene3D - 98 319 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00795 Pumo-Chr10 9911589 9913016 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00795 1 338 U-box Gene Family AT2G35930 39.320 6.30e-85 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00795 - - gmx:100811258 476.478