Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00790 ATGAATGAGGAGGCTCAACACCATGATAGAGGTGTACCTGAGGCTGATATGATGGAGGGTGCAGTAAGTAGTTCTCACTTGCCTACCCCAGAGGGGACAAAACATTCTCCGTTGAAGACGTATGAATTTCAAGTCATTAAGAGGAGGAGACAGAGAAAGAAATGGACTGATTTGGAAGATAAAACTCTGAGGTCTGCGGTAGACAAATATGGCGCTGGAAATTGGAAGCCTATCCTGGATGCTTACAGAGACATCTTTGAAGGAAGAACTGTTGTTGATTTGAAGGACAAGTGGAGAAACATTATGAAGCATGATAACAAATTAAGTGAGAATTAA 336 0.4167 MNEEAQHHDRGVPEADMMEGAVSSSHLPTPEGTKHSPLKTYEFQVIKRRRQRKKWTDLEDKTLRSAVDKYGAGNWKPILDAYRDIFEGRTVVDLKDKWRNIMKHDNKLSEN 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00790 111 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 47 106 IPR017930 -
Pumo10g00790 111 PANTHER MYB TRANSCRIPTION FACTOR 18 104 - -
Pumo10g00790 111 MobiDBLite consensus disorder prediction 1 15 - -
Pumo10g00790 111 ProSiteProfiles Myb-like domain profile. 47 102 IPR001005 -
Pumo10g00790 111 CDD SANT_TRF 53 103 - -
Pumo10g00790 111 SUPERFAMILY Homeodomain-like 54 107 IPR009057 -
Pumo10g00790 111 SMART sant 51 104 IPR001005 -
Pumo10g00790 111 Gene3D - 45 110 - -
Pumo10g00790 111 Pfam Myb-like DNA-binding domain 52 101 IPR001005 -
Pumo10g00790 111 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00790 Pumo-Chr10 9844622 9845280 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00790 14 102 Single Myb Histone (SMH) Gene Family AT1G15720 44.086 6.31e-14 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pumo10g00790 Myb_DNA-binding 1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00790 - K11111 aprc:113864424 107.842