Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00746 ATGGACGTCGAGGACGAGGAAGCTCCACTCCAACAACACTCTGATGCACAATGCCACAACGACCTGCAAAATCTCCCCCTTGAAGAGGCGGGGACGGCGACGGAGGCCGTGGCGGTTGAACCCGATGCGACCACGGAGACGGTGGCGGTGTCCGACGTAACGGGTGACGAGATGATTGAGGAGAAGGGGAATGAAGCAATTCATGTGGATGACGTGGCTTTGGAGACGGAGAAGGTTGAAGAGCAAGCGAATTTGACAATTGATGCGGGAGAGGATGAAATTGGTGACGAAAACACAAATGAAGACGCTTTGATGGAAGAAGAACAAGAACAACAACAACAACAACAAGGGAAGGACGAAGAGGAAGAAGAGCAGCAACAAGGAGAGGACGAAGAGGAACAGCAACAAGGAGAGGAGGAGGAGGAGGAAGAAGAACAGCAACAAGGAGATGAGGAAGAAGAAGAAGAAGAAGAACAGCAGCAAGGAGAAGAAGAAGATTCTGATGCTGATGCTGATGCTGATGCTGATGCTGATGGTGGAATGACAATGACAGAAGATACAGAGGAGAAGAGTGTTGGTGTGAGTGGTGGGAAAAGGAAGCGTGGAGCTGGGAAGAATGCTAAGGCTGCAGGGAGAGTTACATCCAGGAAAAAGATGGAGGAGGACGTTTGTTTCATTTGCTTCGATGGGGGTGACCTTGTGCTTTGTGACCGCAGGGGATGCCCCAAGGCTTACCATCCTTCCTGCGTTAATCGTGACGAGGCCTTCTTTCGAGCCAAGGGAAAGTGGAATTGCGGTTGGCATCTTTGCAGCAACTGTGAGAGGAATGCCTACTATATGTGCTATACATGTACGTTTTCTTTGTGCAAGGGATGCATCAAAGACGCTGTTATCTTATGTGTTAGGGGAAACAAGGGCTTTTGTGAGACATGCATGAGAACTGTAATGTTGATTGAACAGAATGAGCAGGGAAACAATGTGGGACAAATAGATTTTGATGACAAAAACAGCTGGGAGTATCTCTTCAAGGACTACTACATAGATCTAAAAGAAAAACTATCTCTAACATTTGATGAACTCACTCAAGCTAAAAACCCTTGGAAGGGATCTGATATGCTTCATTCTAAAGAGGAATCACCGGATGAACTTTTTGATGCTAGTAATGATAGAGGATCAGATTCAGATAGCTCCTATGAGAATGTAGATTTGAGTCGTTCTAAAAGAAAAAATGCCAAGAAACGGGGAAAGTCCCATTCCAAACAAGGAAATTCATACAGTGCAGTGACAATGCTTGGTGCTGATGGGCCATCTGGAGATGACAGCTTGGAGTGGGCTTCGAAAGAGCTTTTGGAGTTTGTTATGCACATGAGAAATGGAGAGAAATCTGTTTTATCTCAGTTTGATGTGCAGGCTCTTTTGCTAGAGTATATTAAAAGAAATAAGCTTCGAGATCCTCGCCGAAAAAGTCAGATTATTTGTGATGCAAGACTTCAAAATCTGTTTGGAAAACCAAGAGTGGGACATTTTGAAATGTTAAAGCTTCTTGAATCCCATTTCCTTCTAAAAGAGGATTCTCAGGCTGAAGATCTGCAGGGAAGTGTTGTTGACACCGAAGTTAGTCATTTGGAAGGTGATGGCAATCCCAATTCAAATACAAAAGCTGGCAAAGATAAGAGACGTAAAAATCGTAAAAAGGGTGATGAGAGAGGACTTCAAACTAATGTTGATGATTATGCAGCCATTGATAACCATAATATTAATTTAATTTATCTAAGACGTAATTTGGTAGAAGATCTACTTGAAGATACAGAGAAGTTCCATGATAAAGCTGTTGGCTCTTTTGTGAGAATAAGAATTTCTGGTAGTGGTCAGAAACAGGATTTGTATAGGCTGGTTCAGGTTGTAGGTACATGCAAAGCAGCAGAGCCATATAAAGTTGGTAAAAGGATGACAGATATCTTGCTAGAAATCTTAAATTTAAACAAGACAGAGATTGTATCAATTGATATTATCTCAAATCAGGAGTTCACAGAGGATGAATGCAAGCGTCTCCGCCAAAGCATAAAGTGTGGCCTCATAAATCGGCTAACTGTGGGTGACATTCAGGACAAAGCATTGGTGCTTCAGGCAGTTAGAGTAAAAGATTGGCTAGAAACAGAGATAGTGCGGCTGAGTCATCTCCGTGATAGAGCTAGTGAGAAAGGACGCAGAAAAGAGCTCAGAGAATGTGTAGAGAAATTGCAGCTTTTGAAAACACCTGAAGAACGTCAACGCAGGTTGGAGGAAATTCCAGAAATACATGTGGATCCAAACATGGATCCAAGCTATGAGTCTGAAGATGAAGAAGATGAATTGGATGATAAAAGACAAGAAAACTACATGAGACCTAGAGGGTCTACTGCCTTTGGAAGGAGGGGGAGAGATATTGTTTCTCCTAGAAGTGGTTCTATTTCAAATGATTCATGGAGTGGAACAAGGAATTATTCTAATGTGAATCAGGAACTCAGCAGAAATTTGTCTAATAAGGGATTTTCAATTAAAGGGGATAATGCTTCTAATGCTAATGAGGTGCTAAATGATGCTCAATTGCAGCAGGGAAGAGATAGGGAATCACAACTATCTAATAGCTGGGAGAGACAAAAGCTATCTTCAAGCTTGGAAAGTGCTGCTAAAAATACCCAACCATTGGTAACATCTGAGTCTTTCTCTTCTGCTGTATTAGAAGCTTCTGCAGCACCATCTTCTGCCGGAATAACTCCTTCAGCTGTGAAAATTAATGAAACTGAAAAGATGTGGCATTACCAGGATCCATCTGGAAAAGTTCAGGGACCATTTTCCATGGTGCAGCTACGCAAATGGAGTAACACAGGATACTTTCCTGATGATTTGAGGATTTGGAGAACCACTGAGAAGCAAGATGATTCTATACTCTTAACAGATGCCTTGGCAGGGAATTTTTCTAAGGAACCATCGATGGTGGATAAAGCTCAACCGGTGCATGATTTACATTTCCCATCCTCGTACTCTAGGAAGTCTGCACAACAAGGTATGGAAGGTCAAGTTGGAGAAAGACCGACATTTGATCAAAATGGTGGATCTTGGAATTCACATAGTACTCTGGGTTCTCCGGGACAAACCACAGGAGGAAGTTGGAGATCTAAAGATAATATGAATTCTTTATCCAATAAAACTTATCCATTGGCAGTTGAGGTCCCCAAGAACCCTGCAAATGGCTGGGGTTCTGATGCTGGTGTTAGAAATGAAGCAACAAATCTTCCTTCACCTACTCCCCAGACTACTCCTGGTGGGACTAAGGGGCAGGCTTTTGAAAGTAAATGGTCACCAACACCTGTCCAGTTGCCTGGGTCTCTCATAGGAAATTCATTCCCAGGCAGTCACAGAGGTTTGCAGGCCTCTGTGGTAGTTCACCCAGAGCATGCTCTACAAAATGCTGAAAAAGGCTCTAGTTCACAACCTGGTATTAGTTCAGCTTCTACAGATAATACTAAGTTACATCCTCAAGCAACAGCAGTGGCACCTGTTCTGGCTTCAGGGGTTGACATCAAAATGGCGGGTGCAAATATGCAAAACCAGGTTGTGAGTAGCCTCAATTCTCATGCTGAAGCTCAAGGGTGGGGTTCAGCTGGGGTTCCAAAGCCAGAACCACAGGCCTGGGGAGGTGCGTCATCTCAAAGGATAGAACCAAATAATCCTGCTACTATGCCTGCCCAGCCAGCTTCTCATGGCCCGTGGGGTGATGCTTCATCTGTGCAGAACACTGCCTCGTTTAACAGTGGAAATCCAACTGTGAGTTTACCCACACCTGGATTTCTGGGCATGAATACACCTGAGCCTTGGAGACCACCAGCTTCAAGTAGTCAGTCAAACATCACAGCTCCATCTCCAGCTCCAGCTCCACCCAATATGCCTTGGGGCATGGGCATGCCAGGAAATCAGAATATGAACTGGGGTGGGGTTGTACCTGCCAATATGAACGTAAACTGGATGCCTGCGCAGGTGCCAGCACCTGGAAATTCAAATCCAGGATGGGCTACTCCTAGTCAGGGGCTACCTCCGGTGAATGCAGGTGGCTGGGTTGGACCTGGTCAAGGACGTTCCCATGTAAATGCGAATGCAGGTTGGGTTGGACCTGGTCAGGGGCTAGCACCTGGAAATGCCAATCCTGGTTGGGCTGCACCGGCCGGGAATCCAGCCATGTGGGGAAGTGAGCAAAGTCATAATGGAGACAGGTTCCCCAACCAAGGGGATCGTGGTGCACATGGTAGAGATTCTGGTTATGGTGGTAAATCTTGGAACAGGCAGTCATCATTTGGCAGCGGAGGCAGGGGAGGTTCTTCCAGGCCTCCTTTTGGGGGACAAAGAGGAGTTTGCAAGTATCATGAGAGTGGACATTGCAGGAAGGGGGCTTCTTGTGATTTTCTACACACTTAG 4452 0.4499 MDVEDEEAPLQQHSDAQCHNDLQNLPLEEAGTATEAVAVEPDATTETVAVSDVTGDEMIEEKGNEAIHVDDVALETEKVEEQANLTIDAGEDEIGDENTNEDALMEEEQEQQQQQQGKDEEEEEQQQGEDEEEQQQGEEEEEEEEQQQGDEEEEEEEEQQQGEEEDSDADADADADADGGMTMTEDTEEKSVGVSGGKRKRGAGKNAKAAGRVTSRKKMEEDVCFICFDGGDLVLCDRRGCPKAYHPSCVNRDEAFFRAKGKWNCGWHLCSNCERNAYYMCYTCTFSLCKGCIKDAVILCVRGNKGFCETCMRTVMLIEQNEQGNNVGQIDFDDKNSWEYLFKDYYIDLKEKLSLTFDELTQAKNPWKGSDMLHSKEESPDELFDASNDRGSDSDSSYENVDLSRSKRKNAKKRGKSHSKQGNSYSAVTMLGADGPSGDDSLEWASKELLEFVMHMRNGEKSVLSQFDVQALLLEYIKRNKLRDPRRKSQIICDARLQNLFGKPRVGHFEMLKLLESHFLLKEDSQAEDLQGSVVDTEVSHLEGDGNPNSNTKAGKDKRRKNRKKGDERGLQTNVDDYAAIDNHNINLIYLRRNLVEDLLEDTEKFHDKAVGSFVRIRISGSGQKQDLYRLVQVVGTCKAAEPYKVGKRMTDILLEILNLNKTEIVSIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDIQDKALVLQAVRVKDWLETEIVRLSHLRDRASEKGRRKELRECVEKLQLLKTPEERQRRLEEIPEIHVDPNMDPSYESEDEEDELDDKRQENYMRPRGSTAFGRRGRDIVSPRSGSISNDSWSGTRNYSNVNQELSRNLSNKGFSIKGDNASNANEVLNDAQLQQGRDRESQLSNSWERQKLSSSLESAAKNTQPLVTSESFSSAVLEASAAPSSAGITPSAVKINETEKMWHYQDPSGKVQGPFSMVQLRKWSNTGYFPDDLRIWRTTEKQDDSILLTDALAGNFSKEPSMVDKAQPVHDLHFPSSYSRKSAQQGMEGQVGERPTFDQNGGSWNSHSTLGSPGQTTGGSWRSKDNMNSLSNKTYPLAVEVPKNPANGWGSDAGVRNEATNLPSPTPQTTPGGTKGQAFESKWSPTPVQLPGSLIGNSFPGSHRGLQASVVVHPEHALQNAEKGSSSQPGISSASTDNTKLHPQATAVAPVLASGVDIKMAGANMQNQVVSSLNSHAEAQGWGSAGVPKPEPQAWGGASSQRIEPNNPATMPAQPASHGPWGDASSVQNTASFNSGNPTVSLPTPGFLGMNTPEPWRPPASSSQSNITAPSPAPAPPNMPWGMGMPGNQNMNWGGVVPANMNVNWMPAQVPAPGNSNPGWATPSQGLPPVNAGGWVGPGQGRSHVNANAGWVGPGQGLAPGNANPGWAAPAGNPAMWGSEQSHNGDRFPNQGDRGAHGRDSGYGGKSWNRQSSFGSGGRGGSSRPPFGGQRGVCKYHESGHCRKGASCDFLHT 1483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00746 1483 ProSiteProfiles Zinc finger PHD-type profile. 221 287 IPR019787 -
Pumo10g00746 1483 SMART rtf1 580 690 IPR004343 GO:0003677
Pumo10g00746 1483 MobiDBLite consensus disorder prediction 758 774 - -
Pumo10g00746 1483 CDD GYF 929 984 IPR003169 GO:0005515
Pumo10g00746 1483 SUPERFAMILY FYVE/PHD zinc finger 220 273 IPR011011 -
Pumo10g00746 1483 ProSiteProfiles Plus3 domain profile. 580 713 IPR004343 GO:0003677
Pumo10g00746 1483 MobiDBLite consensus disorder prediction 1087 1131 - -
Pumo10g00746 1483 MobiDBLite consensus disorder prediction 122 182 - -
Pumo10g00746 1483 ProSitePatterns Zinc finger PHD-type signature. 224 284 IPR019786 -
Pumo10g00746 1483 FunFam Zinc finger CCCH domain-containing protein 19 432 526 - -
Pumo10g00746 1483 ProSiteProfiles GYF domain profile. 929 983 IPR003169 GO:0005515
Pumo10g00746 1483 SUPERFAMILY Plus3-like 581 709 IPR036128 GO:0003677
Pumo10g00746 1483 Gene3D - 582 710 IPR036128 GO:0003677
Pumo10g00746 1483 SMART PHD_3 223 269 IPR001965 -
Pumo10g00746 1483 CDD Bbox1 269 295 - -
Pumo10g00746 1483 Gene3D SWIB/MDM2 domain 436 529 IPR036885 -
Pumo10g00746 1483 FunFam Zinc finger CCCH domain-containing protein 19 581 710 - -
Pumo10g00746 1483 SUPERFAMILY GYF domain 922 982 IPR035445 -
Pumo10g00746 1483 SMART gyf_5 930 985 IPR003169 GO:0005515
Pumo10g00746 1483 FunFam Zinc finger CCCH domain-containing protein 19 213 313 - -
Pumo10g00746 1483 CDD PHD5_NSD 223 268 - -
Pumo10g00746 1483 MobiDBLite consensus disorder prediction 812 828 - -
Pumo10g00746 1483 ProSiteProfiles SWIB/MDM2 domain profile. 438 521 IPR003121 -
Pumo10g00746 1483 MobiDBLite consensus disorder prediction 1147 1171 - -
Pumo10g00746 1483 MobiDBLite consensus disorder prediction 1251 1276 - -
Pumo10g00746 1483 MobiDBLite consensus disorder prediction 370 389 - -
Pumo10g00746 1483 MobiDBLite consensus disorder prediction 539 571 - -
Pumo10g00746 1483 Pfam Plus-3 domain 585 688 IPR004343 GO:0003677
Pumo10g00746 1483 MobiDBLite consensus disorder prediction 82 212 - -
Pumo10g00746 1483 Pfam GYF domain 932 972 IPR003169 GO:0005515
Pumo10g00746 1483 MobiDBLite consensus disorder prediction 1388 1461 - -
Pumo10g00746 1483 FunFam Zinc finger CCCH domain-containing protein 19 931 988 - -
Pumo10g00746 1483 MobiDBLite consensus disorder prediction 1004 1059 - -
Pumo10g00746 1483 MobiDBLite consensus disorder prediction 863 888 - -
Pumo10g00746 1483 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 211 315 IPR013083 -
Pumo10g00746 1483 Pfam SWIB/MDM2 domain 446 519 IPR003121 -
Pumo10g00746 1483 MobiDBLite consensus disorder prediction 1 24 - -
Pumo10g00746 1483 MobiDBLite consensus disorder prediction 1435 1449 - -
Pumo10g00746 1483 Gene3D - 930 989 IPR035445 -
Pumo10g00746 1483 MobiDBLite consensus disorder prediction 758 828 - -
Pumo10g00746 1483 MobiDBLite consensus disorder prediction 1229 1243 - -
Pumo10g00746 1483 MobiDBLite consensus disorder prediction 1150 1171 - -
Pumo10g00746 1483 MobiDBLite consensus disorder prediction 368 432 - -
Pumo10g00746 1483 MobiDBLite consensus disorder prediction 1026 1059 - -
Pumo10g00746 1483 SMART swib_2 459 524 IPR019835 -
Pumo10g00746 1483 MobiDBLite consensus disorder prediction 86 108 - -
Pumo10g00746 1483 MobiDBLite consensus disorder prediction 1071 1131 - -
Pumo10g00746 1483 ProSiteProfiles Zinc finger C3H1-type profile. 1458 1483 IPR000571 GO:0046872
Pumo10g00746 1483 Coils Coil 104 161 - -
Pumo10g00746 1483 CDD SWIB-MDM2_like 444 519 - -
Pumo10g00746 1483 MobiDBLite consensus disorder prediction 1210 1309 - -
Pumo10g00746 1483 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 128 1483 - -
Pumo10g00746 1483 SUPERFAMILY SWIB/MDM2 domain 441 520 IPR036885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00746 Pumo-Chr10 9507515 9519707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00746 221 308 PHD Transcription Factor Family AT5G36670 31.000 1.32e-06 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI or SNF-BAF60b Pumo10g00746 Plus-3 6.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00746 - - gmx:121174757 2318.89