Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00741 ATGGAGGTAGCAGTGGCCAAAGCGTTGAAACCGAGTTTAAGGAGAGAGTTCATCGTTCAGCAAACGCTCTGCAAGGATATTTTCTGCCTGAACGCGAACACCGTCGGCGGCGGCGAAGATTTTTCCGTCGACGACCTATTTGACTTCTCTAATGGCTCTCTTCACTATGAACAAGAAGAAGAAGAAGAATACGACGAAGAAAAGGAAAGTTTATCGGCTTCGTCGCAGTCACAGGACCGCGGAGAAGACAATAGCAACTCCAATTCCACCGACGTTTCCTATGATTCACTTTTCTCCACCGAATTAGCCGTTCCGGCCGGTGACTTGGAGGACCTGGAGTGGGTTTCACACTTCGTGGACGATTCTCTCCCGGAGCTGTCACTTTTATACCCGATTCGTTCGGAGGAAACGAACCAGTTTGTTGAAGCGGAGCCTTCAGCGAAGAAAACGCCTCGTTTTCCATGGGAAATGAAAATAACGGCCAAGGCGAGAACCGTACGGAATAGAAAGCCCAACACTCGCGTGTGGTCGTTGGGCAGCCCGTTGGTCTCGCTCCCGTCTTCGTGTTCTTCTTCAGTGACGGAGCCGCCCGCGAAGAAACAGAAGAAGCGGGCCGAGGGCCAGGCCGGTGGGGCCCAGATTCAGCGGCGGTGCAGTCACTGCCAGGTGCAGAAGACGCCGCAGTGGAGGACCGGGCCACTGGGCGCGAAGACCCTTTGCAACGCGTGCGGGGTTCGGTACAAGTCGGGTCGGTTATTTTCGGAGTATAGACCGGCGTGTAGCCCCACCTTCTGCAGCGATATTCACTCCAATAGTCACCGTAAGGTGTTGGAGATTCGGAAGAAGAAAGGGGCAGCTGGACCGGATACCGGGGTGGCCCAGACCCAAATGGTTCCCACCTACTGA 906 0.5464 MEVAVAKALKPSLRREFIVQQTLCKDIFCLNANTVGGGEDFSVDDLFDFSNGSLHYEQEEEEEYDEEKESLSASSQSQDRGEDNSNSNSTDVSYDSLFSTELAVPAGDLEDLEWVSHFVDDSLPELSLLYPIRSEETNQFVEAEPSAKKTPRFPWEMKITAKARTVRNRKPNTRVWSLGSPLVSLPSSCSSSVTEPPAKKQKKRAEGQAGGAQIQRRCSHCQVQKTPQWRTGPLGAKTLCNACGVRYKSGRLFSEYRPACSPTFCSDIHSNSHRKVLEIRKKKGAAGPDTGVAQTQMVPTY 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00741 301 Pfam GATA zinc finger 218 251 IPR000679 GO:0006355|GO:0043565
Pumo10g00741 301 SMART GATA_3 212 266 IPR000679 GO:0006355|GO:0043565
Pumo10g00741 301 CDD ZnF_GATA 217 274 IPR000679 GO:0006355|GO:0043565
Pumo10g00741 301 PANTHER GATA TRANSCRIPTION FACTOR 28 287 - -
Pumo10g00741 301 MobiDBLite consensus disorder prediction 185 211 - -
Pumo10g00741 301 Gene3D - 211 262 IPR013088 GO:0006355|GO:0008270
Pumo10g00741 301 ProSiteProfiles GATA-type zinc finger domain profile. 212 248 IPR000679 GO:0006355|GO:0043565
Pumo10g00741 301 MobiDBLite consensus disorder prediction 74 92 - -
Pumo10g00741 301 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 213 273 - -
Pumo10g00741 301 ProSitePatterns GATA-type zinc finger domain. 218 243 IPR000679 GO:0006355|GO:0043565
Pumo10g00741 301 PIRSF Txn_fac_GATA_plant 15 299 IPR016679 GO:0003677|GO:0005634|GO:0045893
Pumo10g00741 301 MobiDBLite consensus disorder prediction 56 92 - -
Pumo10g00741 301 FunFam GATA transcription factor 208 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00741 Pumo-Chr10 9480800 9482817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00741 40 285 C2C2-Gata Transcription Factor Family AT4G36240 42.188 5.50e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pumo10g00741 GATA 9.4e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00741 - - gmx:100780311 483.796
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g00741 10 9480800 9482817 Pumo10g00741 10 9480800 9482817 ECH