Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00738 ATGAAGATCCAGTGTGATGTGTGTGACAAAGTGGAAGCCTCCGTGTTCTGTCCTGCTGATGAAGCTGCTCTTTGCCATAGCTGTGATCGCACCATTCACCACGCCAACAAGCTTGCAACCAAACACCCACGCTTCTCTCTCCACTACCCCACCTCCAAAGACTTCCCTCTTTGTGATATCTGCCAAGAGAGGCGTGTATATCTATTTTGCCAAGAAGACAGGGCATTGCTATGCAGGGAATGTGACGTTTCTATCCACAGAGCCAATGAGCATACCCAGAAGCATAACAGGTTTCTTCTGACGGGTGTGAAGCTCTCTGGGACTTCTTTGGATCCTGCTTCGTCCTCCACCAATTGCACCGATAGAGTCACTGGCTCTGAGGGAAAAAACGCTCGATCTAGAATGAACAGACCCAGATCAGTTTCCAATGAAAATGCCAGTTCCTCTTGCAAGGTTGAAGACAACGTGGCTAGTGACACTGGTTCCGTTTCAACTAGCAGCATTTCTGAGTACTTGATTGAAACAATACCCGGTTACTGTTTCGAAGACCTTCTTGATGCTTCATTTGCACCTAATGGTTTCTGTAAGAACCAGAACTATCATCATTGGGCGTTTCAGGACCAAGATCTTCAAGCTAGGACGTGTTTGGTTGGAGTTAAGGAAATTCCAAAAGCGAACGGTTTCAAAGGGGATGGGAAATGGAGACACTATGATTGTGCCGTTCTTGAAACTAGTCATCCATTCATCAAAAATTCTAAACGCTCTCGATGA 771 0.4604 MKIQCDVCDKVEASVFCPADEAALCHSCDRTIHHANKLATKHPRFSLHYPTSKDFPLCDICQERRVYLFCQEDRALLCRECDVSIHRANEHTQKHNRFLLTGVKLSGTSLDPASSSTNCTDRVTGSEGKNARSRMNRPRSVSNENASSSCKVEDNVASDTGSVSTSSISEYLIETIPGYCFEDLLDASFAPNGFCKNQNYHHWAFQDQDLQARTCLVGVKEIPKANGFKGDGKWRHYDCAVLETSHPFIKNSKRSR 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00738 256 CDD Bbox1_BBX-like 5 47 - -
Pumo10g00738 256 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 206 - -
Pumo10g00738 256 Pfam B-box zinc finger 56 92 IPR000315 GO:0008270
Pumo10g00738 256 CDD Bbox1_BBX-like 57 100 - -
Pumo10g00738 256 SUPERFAMILY B-box zinc-binding domain 50 92 - -
Pumo10g00738 256 Gene3D Classic Zinc Finger 1 96 - -
Pumo10g00738 256 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Pumo10g00738 256 MobiDBLite consensus disorder prediction 111 161 - -
Pumo10g00738 256 SMART bboxneu5 53 100 IPR000315 GO:0008270
Pumo10g00738 256 SMART bboxneu5 4 47 IPR000315 GO:0008270
Pumo10g00738 256 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Pumo10g00738 256 FunFam B-box zinc finger protein 21 1 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00738 Pumo-Chr10 9426961 9428696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00738 1 196 C2C2-CO-like Transcription Factor Family AT1G75540 53.623 1.01e-62 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pumo10g00738 zf-B_box 3.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00738 - - gmx:100800981 364.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g00738 10 9426961 9428696 Pumo10g00738 10 9426961 9428696 ECH