Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00737 ATGCAAAGGGCGACGCAACAAGGCGAAGAAGTAGTATCAATTAGGGGTTCAAAGTGCCAAGACTGTGGGAACCAAGCCAAGAAGGAATGTTCATACTCAAGGTGCAGGACTTGCTGCAAGAACAAAGGGTTTCACTGCCAAACCCATATCAAGAGCACTTGGACTCCTGTGGATAGGAGGCGCCACCCATCTACGGGAGATCATATTCCTGATCAAAAGCACAACCAGATCAACCCATATTCAGGTTTAGAGTTGAAATTTCCGGCTGCTACAAATTCGATGGCTATATTTCGGTGCGTTCAGGTTCGTTCTATGGATGATGCGGTTAATGAAATAGCGTATCAAACATCTGTGAACATTGGAGGACGTGTATTTAGTGGACTACTATATGATCAAGGCCCTGAGCAAAGCTATAATAATAGAGTTGAGGGTGAGAGTACTTCCACGGGCTTTGTTGATCAGCAGCAGAATAATCTCGGTCTTATGAATAATGATGCTTCAATAATCCACAGTAGAGACAGTAGTGGTGCAAGTGCTGGTCACGATGAGCCTCTTTTAACTCCACCATCGTATCCGTTTCCCCTTGCTTCCTTCAGGCCCGGTATGCCATATTTCACATACCCAAGATCTTAA 633 0.4487 MQRATQQGEEVVSIRGSKCQDCGNQAKKECSYSRCRTCCKNKGFHCQTHIKSTWTPVDRRRHPSTGDHIPDQKHNQINPYSGLELKFPAATNSMAIFRCVQVRSMDDAVNEIAYQTSVNIGGRVFSGLLYDQGPEQSYNNRVEGESTSTGFVDQQQNNLGLMNNDASIIHSRDSSGASAGHDEPLLTPPSYPFPLASFRPGMPYFTYPRS 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00737 210 NCBIfam putative zinc finger domain, LRP1 type 18 60 IPR006510 -
Pumo10g00737 210 MobiDBLite consensus disorder prediction 57 76 - -
Pumo10g00737 210 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 12 195 IPR007818 GO:0003700|GO:0006355
Pumo10g00737 210 Pfam Domain of unknown function (DUF702) 16 69 - -
Pumo10g00737 210 Pfam Domain of unknown function (DUF702) 81 135 - -
Pumo10g00737 210 NCBIfam LRP1 C-terminal domain 86 134 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00737 Pumo-Chr10 9405828 9407110 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00737 8 210 C2H2 Transcription Factor Family AT1G75520 37.200 1.29e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Pumo10g00737 DUF702 5.8e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00737 - - pvu:PHAVU_009G004300g 321.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g00737 10 9405828 9407110 Pumo10g00737 10 9405828 9407110 ECH
Pumo10g00737 10 9405828 9407110 Pumo8g01780 8 53892891 53896231 ECH