Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00733 ATGGCAACTTTCTACACAAGTTCAAGTAATCAAAGGGATGCAGTGCCTATGCTGTGTCTTAGGGAGCCTCTGCCTAATTCGTATCCCGAGACACCAATTTTGCCGAGCAACATGACATTGTATATGAACTCTGGTTCATATTCAGGAGCATTGTCTGGCAATCCTCAGCAGCAAAACAATTGCTTTGTGATTCCATCACCATCAGTAGGTGCTTCACATTCCACTCCTGAACAGCAAGAAATCTTAGCTAATATTGGTGGGTTCCAAACTGGGGTTCATGATTTCAGTGCATGGAGGGAGGGTAGAAGTGAGATGTTAGTCAGACAACCTATGGATGGACAGAACTCACAAGGTCAGGGATTATCTCTCAGCCTTGGAACCCACATACCCTCAGGAATTCAAATGCCTTCTATCCATGATAGGAATCATAGTTCAAATTTTGATTCATTTTTGGGTACTAATCCATCAATTTCGGGCAATGAGGCCTACCAAAATGGTTCATCTAGAGATGAGGGTATGAGACATTCTGAAAATCTTCCACCTGGCTTACCTGAAGCTAATCAAGATTTGAACAAAGCGGATTTTTCATTTCATGAAATGTCTAGTGTTGGAAGAACAGTTCCAAGCTCCAAATACCTCAAGGCAGTGCAACAACTACTTGATGAAGTTGTTGATATCCGAAAAGCTATTAAAAGACCTGCTATGAGAAGTCATAGCACACATGAGAAGTCTAAGAAGAATTCTAAGGAGGATGATGAGCAACTAGAAAATGACAGGCCTTCTGCAAATGGAGTGCCTAATTCTCAAGCTTCAGCTAGTAAGACCTCTTGTGAGCTTTCACATGCTGAAAAACAAGATCTGCACCACAAGTTAACAAAGCTTTTGTCAATGTTGGACGAGGTTGACAATAGGTATAAACAATATTATCAGCAGATGCAGATTGTGGTGTCATCATTTGATGTGATGGCAGGATGTGGAGCAGCTAAACCATACACAGCCCTTGCTCTTCAAACCATTTCATGCCATTTTCGGTGTTTGCGTGATGCAATCACTGGTCAAATCAGTGCAACACAAAAGAATCTTGGAGAGCAAGATGCTTCTGGAAGTAACAAAGGAGTTGGAATGGCAAGACTAAAGTATGTGGACCAACAAATCCGACAACAGAGGGTTCTTCAGCAGCTTGGCATGATGCAACATGCATGGAGACCACAAAGGGGGCTTCCAGAAAGCTCTGTTTCAATTCTTCGCGCTTGGCTTTTTGAGCATTTCCTTCATCCCTATCCAAAGGATTCTGATAAGATCATGCTAGCAAGACAGACAGGCTTGACCAGAAGTCAGGTCTCAAATTGGTTTATAAATGCACGTGTGCGTCTATGGAAACCTATGATTGAGGAGATGTACAAGCAAGAGATTTGTGATGCTGACATGGACTCAAGTTCTTCATCAGAAAATGTGTCCAAGGTAACAAAAAGTGATGTCAAGACCTCCAATGATATGGGTGATGATTCACAGCACTGTCAAAGTCCAATAGTAGCTGATACAAATCACAGTGGTGGACAAGCTAAGGACCTCGGACATGATCAGGTTCTTGATACAGAAATTATGGCACCCACTGGATTAGCTAGTCTCATAAATGGAGGTCATGGGGCTGAAACTGAACATAGGTCAGTAAAGCAGACTGAGGAGCAAAGGCCAAATTTGGATGATTGTGATCTCTTCTCTAATGACACAGTTGTTCAATCTGATGGAGCCACTAATGACAGGTTTGTGGCAGTTGGTCCAACATGCCAAATGTCAGAGTTTGAGAGGTTCAAGTCAGGAAGTGGAGTGTCTCTAACATTGGGTTTGCAGCATTGTGAAGGAGGTGATTTTTTGCCTGGTGAGACTCATCTCAGTTTGGTTTCCATGAGGGAGGACGACATCTACAGTGCAACTGCAGCTTCTACAGTTGGAGTAGAGACAGCAGAACTTGAGTGCATTGGTGCTGGAAACCAGCGGCAAAGGTTCAATTCACCTCACATGTTACATGATTTTGTAGTATGA 2043 0.4278 MATFYTSSSNQRDAVPMLCLREPLPNSYPETPILPSNMTLYMNSGSYSGALSGNPQQQNNCFVIPSPSVGASHSTPEQQEILANIGGFQTGVHDFSAWREGRSEMLVRQPMDGQNSQGQGLSLSLGTHIPSGIQMPSIHDRNHSSNFDSFLGTNPSISGNEAYQNGSSRDEGMRHSENLPPGLPEANQDLNKADFSFHEMSSVGRTVPSSKYLKAVQQLLDEVVDIRKAIKRPAMRSHSTHEKSKKNSKEDDEQLENDRPSANGVPNSQASASKTSCELSHAEKQDLHHKLTKLLSMLDEVDNRYKQYYQQMQIVVSSFDVMAGCGAAKPYTALALQTISCHFRCLRDAITGQISATQKNLGEQDASGSNKGVGMARLKYVDQQIRQQRVLQQLGMMQHAWRPQRGLPESSVSILRAWLFEHFLHPYPKDSDKIMLARQTGLTRSQVSNWFINARVRLWKPMIEEMYKQEICDADMDSSSSSENVSKVTKSDVKTSNDMGDDSQHCQSPIVADTNHSGGQAKDLGHDQVLDTEIMAPTGLASLINGGHGAETEHRSVKQTEEQRPNLDDCDLFSNDTVVQSDGATNDRFVAVGPTCQMSEFERFKSGSGVSLTLGLQHCEGGDFLPGETHLSLVSMREDDIYSATAASTVGVETAELECIGAGNQRQRFNSPHMLHDFVV 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00733 680 MobiDBLite consensus disorder prediction 474 524 - -
Pumo10g00733 680 MobiDBLite consensus disorder prediction 231 258 - -
Pumo10g00733 680 SMART prehox3 201 352 IPR006563 -
Pumo10g00733 680 FunFam BEL1-like homeodomain protein 4 404 466 - -
Pumo10g00733 680 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 124 484 - -
Pumo10g00733 680 MobiDBLite consensus disorder prediction 260 278 - -
Pumo10g00733 680 MobiDBLite consensus disorder prediction 150 167 - -
Pumo10g00733 680 MobiDBLite consensus disorder prediction 150 189 - -
Pumo10g00733 680 MobiDBLite consensus disorder prediction 231 281 - -
Pumo10g00733 680 MobiDBLite consensus disorder prediction 551 568 - -
Pumo10g00733 680 MobiDBLite consensus disorder prediction 500 515 - -
Pumo10g00733 680 SUPERFAMILY Homeodomain-like 402 467 IPR009057 -
Pumo10g00733 680 Gene3D - 397 474 - -
Pumo10g00733 680 SMART HOX_1 401 465 IPR001356 GO:0003677
Pumo10g00733 680 CDD homeodomain 401 462 IPR001356 GO:0003677
Pumo10g00733 680 ProSiteProfiles 'Homeobox' domain profile. 398 461 IPR001356 GO:0003677
Pumo10g00733 680 MobiDBLite consensus disorder prediction 546 568 - -
Pumo10g00733 680 Pfam Homeobox KN domain 418 457 IPR008422 GO:0003677|GO:0006355
Pumo10g00733 680 MobiDBLite consensus disorder prediction 474 493 - -
Pumo10g00733 680 Pfam Associated with HOX 207 351 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00733 Pumo-Chr10 9348275 9352825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00733 27 680 Homeobox Transcription Factor Family AT4G34610 41.229 2.53e-134 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Pumo10g00733 POX 6e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00733 - - gmx:100801522 1187.17