Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00706 ATGTTGCACTGTGCGAACACGTCGGGGGACATGACAGTGTTGGAAAGACAGAGGGCGAGGATGAAGTGGCAAGAGGAGCAAGGGTACTTTTCTGGAAATAGCTTCAACGGTGTTTTTTCTTCTTCTTCTCTGCATGTTCAAGATTCCATTATGGTGGCTGCTGATTCCGGTTGTGCACTTGCTGAGGTGGTGGCTCAGGCTCAGGCTCAGGCTCAGGCTCGCTCAATCATTAAGCCATCTGCTCCTTGGCTTGATGCGAATTCTTCAATTTCAAGGACTTTTAGTTGTCCACCTACTCTGGTGGAGCCCGAGCCCGAGCCCAAGCCCACTGACTCCTCCTCAATTGGGAAAGACAGTTTCAAGAAGAGGAAACCTGACAAGCCTCACAATCCCAAGGTTGTTGCAGAAAATGATAACAAAGACAAGAGGATCAAAGTCAGCGCGGACGATGGAGAATCCAAAATCACAGGGAGCACCAAGAGTAACACAACAAACGCAAATAGCAACAAAAGAGAAACCTGTGCGGATACGAAGCAAAATTCGAAAGGCTCTGAGGTTCAAAATCAAAAGCCTGATTACATTCATGTCCGAGCACGTCGTGGCCAAGCCACCGATAGCCATAGCTTAGCTGAAAGAGTTAGAAGGGAAAAAATTAGCGAGAGAATGAAGTATTTGCAAGATTTAGTACCCGGTTGCAACAAAATCACGGGAAAAGCGGGAATGCTCGATGAAATCATCAACTATGTTCAATCTCTTCAGCGACAAGTTGAGTTTCTGTCAATGAAATTAGCTACTGTGAACCCACGGCTTGACTTTAGTATTGATGATCTATTTGAAAAAGAGGTGTTTCCTACTTGTGCTGCAAATTTTCCAAACATAGGAATGTCATCAGACATGACTAACCCTGCCTATCCTCAGTTTAATTCACCACAGCAATTTTTTTCATATGGTGGATTAGACACGGGGATTAACCCTTCCGATATGGGACTTAGAAGGACCATAAGTGCCCCTGTATCAATGCCTGAAACATATCTTCAATCGTCCTGTTTCACACAAATGCTACCCTCCTCAACATGGGAAGGTGATTTCCAAAACTTTTGCAATTTTGATTTTGATCAAGCACGAGCGACATCTTTCCCTTCTCAGCTGTTCTCAGGTCTGGTTGAAGCTGGCAATCTAAAGATGGAGATGTAG 1194 0.4472 MLHCANTSGDMTVLERQRARMKWQEEQGYFSGNSFNGVFSSSSLHVQDSIMVAADSGCALAEVVAQAQAQAQARSIIKPSAPWLDANSSISRTFSCPPTLVEPEPEPKPTDSSSIGKDSFKKRKPDKPHNPKVVAENDNKDKRIKVSADDGESKITGSTKSNTTNANSNKRETCADTKQNSKGSEVQNQKPDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFSIDDLFEKEVFPTCAANFPNIGMSSDMTNPAYPQFNSPQQFFSYGGLDTGINPSDMGLRRTISAPVSMPETYLQSSCFTQMLPSSTWEGDFQNFCNFDFDQARATSFPSQLFSGLVEAGNLKMEM 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00706 397 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 200 271 IPR036638 GO:0046983
Pumo10g00706 397 MobiDBLite consensus disorder prediction 152 188 - -
Pumo10g00706 397 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 113 306 IPR024097 GO:0006355
Pumo10g00706 397 CDD bHLH_AtBPE_like 192 277 - -
Pumo10g00706 397 MobiDBLite consensus disorder prediction 94 191 - -
Pumo10g00706 397 Pfam Helix-loop-helix DNA-binding domain 206 253 IPR011598 GO:0046983
Pumo10g00706 397 MobiDBLite consensus disorder prediction 115 150 - -
Pumo10g00706 397 SMART finulus 208 258 IPR011598 GO:0046983
Pumo10g00706 397 FunFam Basic helix-loop-helix transcription factor 199 271 - -
Pumo10g00706 397 Gene3D - 199 272 IPR036638 GO:0046983
Pumo10g00706 397 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 202 252 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00706 Pumo-Chr10 9074426 9076661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00706 10 312 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 42.813 2.12e-62 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo10g00706 HLH 2.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00706 - - gmx:100798855 600.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g00706 10 9074426 9076661 Pumo10g00706 10 9074426 9076661 ECH
Pumo10g00706 10 9074426 9076661 Pumo8g01852 8 54763408 54765790 ECH