Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00703 ATGGCTTCTGCAGAAATTGAGTACCGATGCTTTGTTGGTGGGCTTGCTTGGGCCACCGACAACGATGCTCTTGAGAAAGCCTTCTCTCCCTATGGCGAGATCGTCGAATCGAAGGTCATCAACGATCGTGAAACTGGAAGATCGAGAGGGTTTGGATTTGTGACCTTCGCCACGGAGCAGGCGATGAGAGACGCAATCGAAGGAATGAACGGCCAGAACCTCGACGGCCGTAATATCACCGTGAACGAGGCTCAGTCCCGTGGAAGAGGAGGTGGTGGCGGCGGCGGAGGCGGAACTGAGGGATCTGATCCAGCCTTTTAA 321 0.5483 MASAEIEYRCFVGGLAWATDNDALEKAFSPYGEIVESKVINDRETGRSRGFGFVTFATEQAMRDAIEGMNGQNLDGRNITVNEAQSRGRGGGGGGGGGTEGSDPAF 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00703 106 MobiDBLite consensus disorder prediction 69 106 - -
Pumo10g00703 106 Gene3D - 2 105 IPR012677 -
Pumo10g00703 106 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Pumo10g00703 106 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Pumo10g00703 106 SMART rrm1_1 9 82 IPR000504 GO:0003723
Pumo10g00703 106 SUPERFAMILY RNA-binding domain, RBD 8 98 IPR035979 GO:0003676
Pumo10g00703 106 CDD RRM2_NsCP33_like 9 84 - -
Pumo10g00703 106 PANTHER GEO13361P1-RELATED 7 93 - -
Pumo10g00703 106 FunFam Glycine-rich RNA-binding protein GRP1A 2 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00703 Pumo-Chr10 9044523 9047296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00703 10 87 Eukaryotic Initiation Factors Gene Family AT2G23350 35.897 2.00e-09 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00703 - K13195 gmx:100777821 170.629