Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00688 ATGTCGAGCTCATCGGAGTATTCGGGATTTTCCGGCCAACGGCCGGCGGAGAAGTCCATGTTCTCTCGGACTTGTATTCTAATGAGCCAATACCTCAAGGAGAAGGGCAGCTTCGGAGACCTTACCCTCGGGATGACTTGCACAAACGGTTCCCCTGACACATCATGTCACTCTGCAACAACCATGGAGTTGTTTCACTCAATCAAGACACCACCAACCATGCAGACTGTTTATCCTCGCCACTCAGAGATTCCAACTATTGTTAAACCAAGGTCTATGGAGAAGGAACCTAAAGCTGCTCAGTTGACGATCTTCTATGCTGGGCAAGTTTTTGTGTTTGATGATTTTCCTGCTGATAAAGTGCAGGAGATATTGTCTTTGGCCTTGGCCAGCAAGGGAATATCCCAAAGCCAGAACTCCTCTGCATATGCTCACACCCATAACCAGCAAGGGAATGATCATCCTTCAAGTATTTCTAATATCATCCCTCAAGCACCATCCACACCAATTGTTAATGACATGCCAATCGCTAGGAAAGCTTCCCTTCATCGGTTCCTTGCCAAGAGGAAAGATAGAATTGCTGCCAAAGCGCCATATCAAGCAAACAGTCCTATCTCTGCTCCTGATAAGCCGGCTGAATCATTAGGTGCTAAATCAACACACATCTGA 669 0.4664 MSSSSEYSGFSGQRPAEKSMFSRTCILMSQYLKEKGSFGDLTLGMTCTNGSPDTSCHSATTMELFHSIKTPPTMQTVYPRHSEIPTIVKPRSMEKEPKAAQLTIFYAGQVFVFDDFPADKVQEILSLALASKGISQSQNSSAYAHTHNQQGNDHPSSISNIIPQAPSTPIVNDMPIARKASLHRFLAKRKDRIAAKAPYQANSPISAPDKPAESLGAKSTHI 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00688 222 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 15 210 IPR040390 -
Pumo10g00688 222 MobiDBLite consensus disorder prediction 140 165 - -
Pumo10g00688 222 ProSiteProfiles Tify domain profile. 95 130 IPR010399 -
Pumo10g00688 222 SMART tify_2 95 130 IPR010399 -
Pumo10g00688 222 Pfam tify domain 96 128 IPR010399 -
Pumo10g00688 222 MobiDBLite consensus disorder prediction 197 222 - -
Pumo10g00688 222 Pfam Jas motif 175 200 IPR018467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00688 Pumo-Chr10 8882088 8884005 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00688 1 211 Tify Gene Family AT1G19180 42.915 1.03e-42 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Pumo10g00688 tify 7.8e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00688 K13464 - gmx:100807356 315.464