Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00684 ATGGTGAGAAACCCACGGGTAATTCCCATGGCATTGCTGATATGGATGTTGTTGATGCCGCTTTGCAAAGCCAACAGTGTGGCTTCTTCCCCTGCTCCGCTACAACAGGATCAAGTAATGGTCGAACAGGGTGATGATAACAAAAACGGCGATTCTGATCCTAGTCATGTGCCGGAAACCAGTGTAATTAGTGATAGTCAGTTTGAAGTTGAAGATGCTAAGACCGTTTCGCATCAGGAACTGATCACTCCAAAGCCTAAAGAGAAGAATGTCAGAGAAATGAAGAATGTGCTAAATGATACCGAGATGACTGACTATGATGAGTATGGAACACCTCTGGATCGAGAAACATTTATGAAAGAGCTTGAGACTTTCTACAGAGAGCGATCCTTGGAATTTAAGCCTCCTAAGTTTTATGGAGAGCCACTAAATTGCCTTAAGTTGTGGAGAGCAGTTATCAGACTAGGCGGCTATGATGTGGTAACTGGATCCAAGTTGTGGCGGCAAGTAGGAGAGTCTTTCCACCCCCCAAAGACCTGCACTACTGTCTCATGGACATTTAGAATTTTTTATGAGAAGGCACTTTTAGAGTATGAAAAGCATAAGAGAGAGATTGGGGAGCTACAGCTCCCTGTTGGATCATTCCATCAATCTTCAAATGTGGAAAAAGAGCCTGCTGCTTACCAGACTCCAGGCTCAGGTAGAGCACGAAGGGATGCAGCAGCACGCGCAATGCAAGGTTGGCATGCTCAGCGCCTTCTTGGATACGAGCGTTTGTCTTTTCTTGCACAGGACAAGACCTTCAGTTCCACACCAAAGCGTGAAAAGAACCTAAAAAGTATTGGTATGATTAATAAACAGAGGACACCGTCTGGTCTGGAGCATGCTGAGAAAGCTGCAAATATTGAAGGAGATCGACAATTGGTCACAGCGGTAGTGGACATTGGACCCCCAGCTGACTGGGTGAAGATCAATGTGCGGGAAACTAAGGATTGTTTTGAGGTGTATGCCCTAGTTCCTGGGCTCCTTCGTGAGGAGGTGCGAGTCCAATCAGATCCAGTTGGACGTCTTGTTATAACTGGTCTGCCAGAACACATTGACAATCCATGGGGAATTACTCCCTTCAAAAAGGTTGTGAATTTACCTGCAAGAATTGATCCGCTTCAGACATCTGCTGTTGTTAGTTTGCATGGTCGACTATTTGTACGGGTTCCTTTTGAGCAGGGAACTGTGTGA 1236 0.4563 MVRNPRVIPMALLIWMLLMPLCKANSVASSPAPLQQDQVMVEQGDDNKNGDSDPSHVPETSVISDSQFEVEDAKTVSHQELITPKPKEKNVREMKNVLNDTEMTDYDEYGTPLDRETFMKELETFYRERSLEFKPPKFYGEPLNCLKLWRAVIRLGGYDVVTGSKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKREIGELQLPVGSFHQSSNVEKEPAAYQTPGSGRARRDAAARAMQGWHAQRLLGYERLSFLAQDKTFSSTPKREKNLKSIGMINKQRTPSGLEHAEKAANIEGDRQLVTAVVDIGPPADWVKINVRETKDCFEVYALVPGLLREEVRVQSDPVGRLVITGLPEHIDNPWGITPFKKVVNLPARIDPLQTSAVVSLHGRLFVRVPFEQGTV 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00684 411 ProSiteProfiles ARID domain profile. 112 203 IPR001606 GO:0003677
Pumo10g00684 411 SUPERFAMILY ARID-like 100 209 IPR036431 GO:0003677
Pumo10g00684 411 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 310 411 IPR002068 -
Pumo10g00684 411 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 49 408 IPR045147 GO:0006357
Pumo10g00684 411 CDD ARID 114 199 - -
Pumo10g00684 411 FunFam AT-rich interactive domain-containing protein 3 302 410 - -
Pumo10g00684 411 Pfam ARID/BRIGHT DNA binding domain 115 199 IPR001606 GO:0003677
Pumo10g00684 411 SMART ARID_2 109 199 - -
Pumo10g00684 411 Gene3D - 113 210 IPR036431 GO:0003677
Pumo10g00684 411 FunFam AT-rich interactive domain-containing protein 3 112 211 - -
Pumo10g00684 411 SMART bright_3 113 204 IPR001606 GO:0003677
Pumo10g00684 411 Gene3D - 308 410 IPR008978 -
Pumo10g00684 411 MobiDBLite consensus disorder prediction 43 64 - -
Pumo10g00684 411 SUPERFAMILY HSP20-like chaperones 319 406 IPR008978 -
Pumo10g00684 411 CDD ACD_sHsps_p23-like 326 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00684 Pumo-Chr10 8805466 8813680 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00684 46 408 ARID Transcription Factor Family AT1G76510 63.288 1.55e-152 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Pumo10g00684 ARID 1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00684 - - gmx:100777965 701.434