Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00681 ATGGCATACCAAGCGATCCAGGGTCCGAGCTCGGGATCGAGTTCGAGTTCGGGGTTTCAGTTATTGAATTCTCCGTTTGGAGACACCACCTACACCAAAGTCTTCGTCGGAGGATTGGCCTGGGAGACTCAGAGCGAAACCATGCGCCGCTACTTCGAGCAGTTCGGCGAGATTCTCGAGGCCGTCGTCATCACCGATAAGAACACTGGAAGATCCAAGGGCTATGGTTTCGTGACTTTCCGGGATCCTGAGGCTGCAAGGAGAGCGTGTGCTGATCCAACTCCTGTTATTGACGGCAGAAGGGCCAATTGTAATTTGGCTTCACTTGGTCGACCACGCCCCCCTCTGCCTTATGGTCGGATAAGACCTGCCTCCCCTTATGTTGGAAGTCTGCAACCAGCTCGTGGTGCTTATGTTGGGGGTTTTGGCTACCAGCAACCACTTTCCTACAGCTATCAACAAGGATTGGTTTACCCTCCTTATGGGTATACGACATATGGACCTGAGTACGTCTACCCACAGAGTCTGTACAACCCATATATGGGGCAACAGTACCTTCAGATATATGGAGTGCCTGGAGCAGTGAATACAACTATTTATCCTTATGGACAAGTGGGTCAGGCTATTCCTAGTGGTCATGGTTATTCGACAATGCAGGGTTATACAGTACCAGGTCATCAGATTGTGCCCTATGGTGGATCCAATGTTAATGCCATAACAACTTCACCTATGCCTGCCATTCAAGCTTCATATCCTAGTGGTATGGTTGTCTACCCTGAAGAATTTCTATTTATGACTCAGGATGTGCACTTTTGTTGCCTTGTGAACTTGTGTTGTACTTTTCACACGTCTCAATTTAATTCATCCTGCCTAAATTTTCTCGTGATTGAAAGAGTGCTGCAATTTATATCTGATTCATGA 921 0.4756 MAYQAIQGPSSGSSSSSGFQLLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACADPTPVIDGRRANCNLASLGRPRPPLPYGRIRPASPYVGSLQPARGAYVGGFGYQQPLSYSYQQGLVYPPYGYTTYGPEYVYPQSLYNPYMGQQYLQIYGVPGAVNTTIYPYGQVGQAIPSGHGYSTMQGYTVPGHQIVPYGGSNVNAITTSPMPAIQASYPSGMVVYPEEFLFMTQDVHFCCLVNLCCTFHTSQFNSSCLNFLVIERVLQFISDS 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00681 306 PANTHER BOULE-RELATED 10 252 - -
Pumo10g00681 306 Gene3D - 4 116 IPR012677 -
Pumo10g00681 306 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 90 IPR000504 GO:0003723
Pumo10g00681 306 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 109 IPR000504 GO:0003723
Pumo10g00681 306 SMART rrm1_1 33 105 IPR000504 GO:0003723
Pumo10g00681 306 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 26 113 - -
Pumo10g00681 306 CDD RRM_RBM24_RBM38_like 32 107 - -
Pumo10g00681 306 SUPERFAMILY RNA-binding domain, RBD 31 143 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00681 Pumo-Chr10 8779635 8782595 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00681 21 108 C2H2 Transcription Factor Family AT2G19380 43.182 4.76e-17 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00681 - - gmx:100779244 481.1