Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00680 ATGTCCGCAAAACGCTCGTCGGAGACGTCGGTTCTATCCGCAGAGTCCTTCGATTTCCTCGAAACTTGGGGTTTGATCAATTACCACCCGTCTTCGTCGCTGACCAAACCCTTGAAGTGGGACGATAAAGAGACCAAACCCGATTCTTCGTCCAACTCCACCGAATCTTCTTCCGCTCCCGTCAAAGAAAACACTAAGAGACTCTGCAGTGGCTGCAAAGCCGTCTGCACCATTGCTTGTTTTGCCTGTGATAAGTATGATTTGACACTTTGTGCGAGGTGTTATGTTCGCGGCAATTATCGAGTTGGAGTGAACTCTTCGGATTTTAGGCGAGTGGAGATAAGTGAGGAGACAAAGACAGATTGGAGCGAAAAGGAGACCACGAATCTTCTGGAAGCTATTACGCATTACGGTGATGACTGGAAGAGGGTTTCTCAGCATGTTGCTGGCAGAACTGAGAAGGAGTGTGTTGCTCATTTTTTGAAGCTTCCTTTTGCGGATCAATTCCAGCAATATCAACAACACCCTGCTGTCAATGGCACTGATGACGGTTCTAATCAGTTAAAGAGGGTAACTAATGCTGATGCTGAATCTGAATTGGATACTGTTGCCTCTGCCGAACCTAGTAAGAGAATGCGTCTAACGCCTCTTGCAGATGCAAGCAATCCTATTATGGCTCAGGCTGCTTTCCTGTCTGCTTTGGCAGGGTCAGAGGTTGCACAAGCTGCTGCTCAAGCTGCATTGACAACTCTGTCTGAGGTTTACAAAGCAACTAAAATAAATTATCGGTCATTTCCAAGGAATACATTGCTGCAAGATGCTGGCATCGCGTCTAACGGTGGTAATACTACGGATTCATTTCAAGGATCTCGATTGCATGCAAATATACAGCTTGAGAAGGAAGAGTTAGATGTGGAAAAAGCAATTTCTGAGATTATAGAAGTTCAGATGAAAAATATCCAAGACAAGCTTGTTCATTTTGAAGATTTAGACCTGCTGATGGAAAAAGAAGGCCAGCAGCTGGAGCAAATGAAAAATATGTTTTTCCTTGATCAGCTTACACTTTTATTTCATAAATCATCTACACCAAAAACTGGAGAATGCCAAGAAGGCAATAATGTAAAGACGAACCATGGCTGA 1140 0.4404 MSAKRSSETSVLSAESFDFLETWGLINYHPSSSLTKPLKWDDKETKPDSSSNSTESSSAPVKENTKRLCSGCKAVCTIACFACDKYDLTLCARCYVRGNYRVGVNSSDFRRVEISEETKTDWSEKETTNLLEAITHYGDDWKRVSQHVAGRTEKECVAHFLKLPFADQFQQYQQHPAVNGTDDGSNQLKRVTNADAESELDTVASAEPSKRMRLTPLADASNPIMAQAAFLSALAGSEVAQAAAQAALTTLSEVYKATKINYRSFPRNTLLQDAGIASNGGNTTDSFQGSRLHANIQLEKEELDVEKAISEIIEVQMKNIQDKLVHFEDLDLLMEKEGQQLEQMKNMFFLDQLTLLFHKSSTPKTGECQEGNNVKTNHG 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00680 379 MobiDBLite consensus disorder prediction 29 60 - -
Pumo10g00680 379 Coils Coil 298 318 - -
Pumo10g00680 379 SUPERFAMILY Homeodomain-like 118 168 IPR009057 -
Pumo10g00680 379 ProSiteProfiles Myb-like domain profile. 114 164 IPR001005 -
Pumo10g00680 379 PANTHER SWI/SNF COMPLEX-RELATED 45 355 - -
Pumo10g00680 379 Pfam Myb-like DNA-binding domain 120 163 IPR001005 -
Pumo10g00680 379 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 119 168 IPR017930 -
Pumo10g00680 379 MobiDBLite consensus disorder prediction 194 214 - -
Pumo10g00680 379 ProSiteProfiles SANT domain profile. 117 168 IPR017884 -
Pumo10g00680 379 SMART sant 118 166 IPR001005 -
Pumo10g00680 379 Pfam SWIRM-associated region 1 294 356 IPR032451 -
Pumo10g00680 379 CDD SANT 122 163 IPR001005 -
Pumo10g00680 379 Gene3D - 117 168 - -
Pumo10g00680 379 FunFam SWI/SNF complex subunit SMARCC2 isoform C 117 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00680 Pumo-Chr10 8772874 8776504 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00680 69 160 EF-hand Containing Proteins AT3G07740 30.841 2.23e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pumo10g00680 SWIRM-assoc_1 7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00680 K11649 - gmx:100779777 677.552