Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00675 ATGTTGGCAATGGAAGAGCTACTGTGTGAACTTAGTGATCATGAAAAGAGAAACGAGCAAGGTCTGCCACCGGGTTTCAGGTTTCACCCCACTGATGAAGAACTTATAACCTTTTACTTGGCTTCAAAGGTCTTTAATGGAACCTTCACTAATGTCAAGTTTGCTGAGGTTGACCTCAATAGATGCGAGCCTTGGGAACTTCCAGCAGATGTGGCAAAGATGGGGGAGAGAGAGTGGTATCTGTTCAGCTTGAGGGACAGGAAATACCCAACTGGACTAAGAACAAACAGAGCAACCGGAGCTGGGTACTGGAAAGCCACTGGGAAGGACAAGGAGGTGTACAGTGCATCGAGTGGAACCCTACTTGGAATGAAGAAGACCCTTGTTTTCTACAAAGGCAGGGCCCCTCGAGGTGAAAAGACCAAATGGGTCATGCACGAGTACCGTTTGGACGGTCACTTTTCCATTCCCCTTCCCCACCCTCACACCTCTAAGGAGGAGTGGGTGATATGCAGGATATTTCATAAATCTGGGGAAAAGAGAACTCCACTGCTCCAAGTTCAAGGACATTCAGATGCTTCTCCGTCCCCAACAAAAAGTTGTCTACCTCCATTACTTGCAGGCCCAACTTCCTTTACACTGGAACCAGAATCTCAATCTCATTCTCAGCGAGACTTCCAAAGCCCGGTTCTGATTCATCACCACCAAGATCAAAATGATCTCTATCACCCTCATCTTTTCCCATTATTGCATGCATCACCATCACCAGAAACCACCAACGCCAAAATTGCACCATCATTTTCTGACCTATTCTTGAAGCCCCTCCAGTTCTCACAACAAAATTGCACCCTGAACCTGAAGGCCAAGGAACAAACAATTCCAAAAGTAACCAAAACGGAGGACACTGGTACATTCTATCAATATCATCATGAATTACTAGATGGATGCTGGGTGAACAAGTTTAACCAAAATCCAAGTAATTATTTTCCTCTTGAGATGGATGCTGCTGGGGTGATGGCATTCTCAGGATCAGGAGCTGCAAGGGACATGTCCACTTCAACAGCCTTTAATAGGGTAGCAGGCTTGCAGCAGGTGCTAGATGCCGCTCATATCGGAATAGATTCTTGCCCTTTGGCCCAGCATGTTTAA 1149 0.4621 MLAMEELLCELSDHEKRNEQGLPPGFRFHPTDEELITFYLASKVFNGTFTNVKFAEVDLNRCEPWELPADVAKMGEREWYLFSLRDRKYPTGLRTNRATGAGYWKATGKDKEVYSASSGTLLGMKKTLVFYKGRAPRGEKTKWVMHEYRLDGHFSIPLPHPHTSKEEWVICRIFHKSGEKRTPLLQVQGHSDASPSPTKSCLPPLLAGPTSFTLEPESQSHSQRDFQSPVLIHHHQDQNDLYHPHLFPLLHASPSPETTNAKIAPSFSDLFLKPLQFSQQNCTLNLKAKEQTIPKVTKTEDTGTFYQYHHELLDGCWVNKFNQNPSNYFPLEMDAAGVMAFSGSGAARDMSTSTAFNRVAGLQQVLDAAHIGIDSCPLAQHV 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00675 382 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 19 256 - -
Pumo10g00675 382 Pfam No apical meristem (NAM) protein 23 150 IPR003441 GO:0003677|GO:0006355
Pumo10g00675 382 Gene3D NAC domain 31 180 IPR036093 GO:0003677|GO:0006355
Pumo10g00675 382 ProSiteProfiles NAC domain profile. 22 176 IPR003441 GO:0003677|GO:0006355
Pumo10g00675 382 FunFam NAC domain-containing protein 100-like 31 180 - -
Pumo10g00675 382 SUPERFAMILY NAC domain 17 176 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00675 Pumo-Chr10 8746236 8748541 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00675 1 182 NAC Transcription Factor Family AT1G76420 73.077 2.98e-94 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo10g00675 NAM 4.6e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00675 - - gmx:100780313 547.354