Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00672 ATGACTCGTCCTTTCAGATATTTAGGCGAGCGCAACTCGTCCACCGACTCCGCCGTCGTCGATTCCGACTTCGTCGTCATCCTCGCCGCCCTCCTCTGCGCTCTCATCTGCGTCCTCAGCCTCGTCGCCGTCGCCCGCTGCGGCTGTCTCCGCCGCCTCCGCCTCTCCTCCGCCGCCACTCCCCAGCCTCCTCCCGCCGCCGCCAACAAAGGCGTCAAGAAGAAGGTCCTCCGCTCCCTCCCCAAGCTCACCGCCACCGCCGAATCCGCGGTCAAGTTCGCCGATTGCGCGATCTGTCTCACCGAATTTTCCGCCGGAGACGAAATCCGAGTGCTGCCTCAGTGCGGACATGGATTCCACGTCAGCTGCATCGACGCCTGGCTCAGATCGCACTCCTCGTGTCCGTCCTGCCGTCAGATTCTGGTGGTTTCTCGCTGCGACAAGTGCGGCGGGATCCCGGCTCCGGCCAGCTCCAGTTCCAGCTCCGCGCCGCCGCCGCCTCCGGATTCCGAGGCCAGATTCAAGGTAAGGGAGGACGACGCCAATAGGTTCTTGCCTTAG 561 0.6453 MTRPFRYLGERNSSTDSAVVDSDFVVILAALLCALICVLSLVAVARCGCLRRLRLSSAATPQPPPAAANKGVKKKVLRSLPKLTATAESAVKFADCAICLTEFSAGDEIRVLPQCGHGFHVSCIDAWLRSHSSCPSCRQILVVSRCDKCGGIPAPASSSSSSAPPPPPDSEARFKVREDDANRFLP 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00672 186 ProSiteProfiles Zinc finger RING-type profile. 96 138 IPR001841 -
Pumo10g00672 186 MobiDBLite consensus disorder prediction 153 186 - -
Pumo10g00672 186 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 14 150 - -
Pumo10g00672 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 142 IPR013083 -
Pumo10g00672 186 CDD RING-H2_EL5-like 95 138 - -
Pumo10g00672 186 SMART ring_2 96 137 IPR001841 -
Pumo10g00672 186 MobiDBLite consensus disorder prediction 171 186 - -
Pumo10g00672 186 Pfam Ring finger domain 95 138 IPR001841 -
Pumo10g00672 186 SUPERFAMILY RING/U-box 80 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00672 Pumo-Chr10 8685369 8686230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00672 5 186 C3H Transcription Factor Family AT1G20823 62.755 8.52e-69 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00672 - - gmx:100794614 288.885