Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00664 ATGAATTTGTTTTGGGTGGTTGCTTGTTGGGTGGTGTCGTGTTTGGGATTATCATCAGTATCTCCGTTTGTGGCGGCTGCAAACGTGTCATCCTCAAGACCCGCCGTTGTCAACATTGGAGCAATCTTCAACATCGATTCCATTCTTGGGAAAGTGGCTAAAATTACATTGGAGGAAGCGGTAAAAGATGTAAACGCCGACACTAGCATTCTACATGGAACTAAACTTGTTCTCACTATGCAAAATTCCAATCACAGTGGTTTCATAGGCATGGTTCAAGCTTTGCGGTTCATGGAGACTGATGTGATTGCTATAATAGGACCACAATCTTCTGTGACTGCCCACATAATATCCCATGTTGCAAATGAACTCCGGGTTCCTTTATTGTCATTTGCTGCAACAGACCCTACCCTCTCATCGCTGCAGTTCCCTTTCTTTGTGAGGACAACACAGAGTGATCTGTACCAAATGAAGGCTGTTGCTGAAATCATTGATTATTATGGTTGGAAGGAGGTGATTGCCATTTATGTGGATGATGATTATGGGCGAAATGGTGTGGCCACATTGGATGATGAACTAGCTGCCAGGCGCTGTAGAATCTCCTTCAAGGAAGGGATTAAATCCGGAACTGAGGTTGACCGGGGTGAGATTACAAGTTTACTTGTGAAAGTGGCACTGATGCAATCTCGGGTCATTGTGCTCCATGCACAAACTGATTCTGGATTTATGGTTTTCAATGTGGCGCGTTATCTTGGGATGACAGACAATGGCTATGTGTGGATAGTCACAGACTGGCTCTCTTCTCTTCTGGATTCTTCTTCTCTCCCTTCAGAGACAATGGATGTTCTCCAAGGAGTACTTGTTTTGCGCCAGCATACACCTGATTCAGATAGAAAAAGGGCATTTCTCTCTAGGTGGAAGAACTTAACTGGTGGCTCTTTGGGGTTACATTCTTATGGCCTATACGCTTATGATTCTGTTTGGCTGGTTGCACGTGCTATTGATGCTTTTTTCAATCAGGGTGGGATTGTCTCGTGTACCAATTACACAAGTTTAGGTGGTGATAAGGGAGGTGATCTTAACCTTGATGCAATGAGCATTTTTGACAATGGAACGCTTCTGTTGAAGAACATATTGAAGAGTGATTTTGTTGGATTAACAGGTCGAATGAAATTTGAACCAGACCGGTCTCTTGTTCATCCTGCCTACGACGTCCTTAATGTGGTTGGAACTGGCCTTAGGAGAGTTGGTTACTGGTCCAACTATTCTGGTTTGTCAATTGTGTCTCCTGAGATATTGTATGCAAAGCCACCTAATAGATCAAGTGCAAACCAAAAACTTTACAGTGTGATATGGCCTGGAGAAACATTATCTAAACCCCGCGGGTGGGTCTTCCCAAACAATGGTAGACAATTGAGAATTGGTGTGCCTATCCGAGTCAGTTACCGTGAATTTGTGGCACCAGTGCAGGGAACAGAGATGTTTAAAGGTTTCTGTGTTGATGTATTCACAGCAGCTGTAAACTTGTTGCCTTATGCTGTTCCTTACCGTTTTGTCCCATTTGGAGATGGCCGCAAAAATCCAAGCTACACACAACTTGTCAACTTAATCACAACTGGTTACTTTGATGGTGCCATTGGTGACATTGCTATTGTCACAAACCGGACAAGGATTGTAGATTTCACACAGCCATATGCTGCATCTGGACTTGTTGTGGTTGCCCCTTTCAAGAAAATCAATTCTGGTGGTTGGTCTTTCCTGCAGCCATTTACTCCACTTATGTGGATTGTGACTGCTTGTTTCTTCCTTTTCATTGGGATAGTCATATGGATTCTGGAACACAGGATAAATGATGAGTTCAGGGGTCCACCTAGACAGCAAATTATAACCATGTTGTGGTTTAGCCTGTCAACTCTGTTTTTTTCCCACAGAGAGAATACCATGAGTGCTCTTGGTCGGTTGGTGATGCTCATATGGTTATTTGTGGTTTTGATCCTCACATCCAGCTACACTGCAAGTTTAACATCCATACTCACAGTGCAGCAGTTATCTTCTCCTATCAGTGGAATAGAGAGCATAAAAGCTAGTGATGAACCTATAGGGTTCCAAGTGGGTTCATTTGCAGAATATTACATGACTCAAGATCTTGGAATAGCCAAATCTAGGCTTATTCCCCTTGGATCTCCGGAAGAATATGCTAAGGCACTCCAGCTTGGTCCTAAAAGAGGAGGTGTTGCTGCTATTGTTGATGAACGACCCTATGTCGAAATCTTCTTATCAAGCCAGTGCACATTCAGGATTGTAGGTCAGGAGTTCACCAGAAGTGGCTGGGGTTTTGCATTCCCTCGGGACTCCCCTTTGGCTGTGGATATGTCAACTGCCATTCTACAACTTTCTGAAACTGGTGATCTACAGCGGATTCATGATAAGTGGATGACACGAAGCTCTTGTAGTTTAGACAATGCCGAAATTGATTCAGATCGTCTTAAGCTTAAAAGCTTCTGGGGTCTCTTTCTCATTTGTGGGATAGCTTGCTTTATTGCTCTTGTCCTACATTTTTTGCAACTTATGTTCCAGTTATGGCAATCTCCTCCTTCTGAACCTGCTTCTAGTGCTAGCTCAATTTCTGGTCGTTTTCAAAGATTTCTTACACTCATTGATGAGAAGAAAGATCCATCAAAGAGTAAAGGAAGAAAGAGGAACGGAGATGAAAGATCACTTGAAGATCAACTGGGAAGGCAGCCAAAGAGGGTACAGACAGAAATAACGGCCAACTCAAACAATTAA 2787 0.432 MNLFWVVACWVVSCLGLSSVSPFVAAANVSSSRPAVVNIGAIFNIDSILGKVAKITLEEAVKDVNADTSILHGTKLVLTMQNSNHSGFIGMVQALRFMETDVIAIIGPQSSVTAHIISHVANELRVPLLSFAATDPTLSSLQFPFFVRTTQSDLYQMKAVAEIIDYYGWKEVIAIYVDDDYGRNGVATLDDELAARRCRISFKEGIKSGTEVDRGEITSLLVKVALMQSRVIVLHAQTDSGFMVFNVARYLGMTDNGYVWIVTDWLSSLLDSSSLPSETMDVLQGVLVLRQHTPDSDRKRAFLSRWKNLTGGSLGLHSYGLYAYDSVWLVARAIDAFFNQGGIVSCTNYTSLGGDKGGDLNLDAMSIFDNGTLLLKNILKSDFVGLTGRMKFEPDRSLVHPAYDVLNVVGTGLRRVGYWSNYSGLSIVSPEILYAKPPNRSSANQKLYSVIWPGETLSKPRGWVFPNNGRQLRIGVPIRVSYREFVAPVQGTEMFKGFCVDVFTAAVNLLPYAVPYRFVPFGDGRKNPSYTQLVNLITTGYFDGAIGDIAIVTNRTRIVDFTQPYAASGLVVVAPFKKINSGGWSFLQPFTPLMWIVTACFFLFIGIVIWILEHRINDEFRGPPRQQIITMLWFSLSTLFFSHRENTMSALGRLVMLIWLFVVLILTSSYTASLTSILTVQQLSSPISGIESIKASDEPIGFQVGSFAEYYMTQDLGIAKSRLIPLGSPEEYAKALQLGPKRGGVAAIVDERPYVEIFLSSQCTFRIVGQEFTRSGWGFAFPRDSPLAVDMSTAILQLSETGDLQRIHDKWMTRSSCSLDNAEIDSDRLKLKSFWGLFLICGIACFIALVLHFLQLMFQLWQSPPSEPASSASSISGRFQRFLTLIDEKKDPSKSKGRKRNGDERSLEDQLGRQPKRVQTEITANSNN 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00664 928 Pfam Receptor family ligand binding region 58 410 IPR001828 -
Pumo10g00664 928 SUPERFAMILY Periplasmic binding protein-like II 448 814 - -
Pumo10g00664 928 FunFam Glutamate receptor 709 816 - -
Pumo10g00664 928 FunFam Glutamate receptor 583 713 - -
Pumo10g00664 928 SUPERFAMILY Periplasmic binding protein-like I 32 428 IPR028082 -
Pumo10g00664 928 CDD GluR_Plant 470 811 - -
Pumo10g00664 928 Gene3D - 56 400 - -
Pumo10g00664 928 Gene3D - 467 581 - -
Pumo10g00664 928 PRINTS Metabotropic glutamate GPCR signature 156 172 IPR000337 GO:0004930|GO:0007186|GO:0016020
Pumo10g00664 928 PRINTS Metabotropic glutamate GPCR signature 105 131 IPR000337 GO:0004930|GO:0007186|GO:0016020
Pumo10g00664 928 PRINTS Metabotropic glutamate GPCR signature 172 189 IPR000337 GO:0004930|GO:0007186|GO:0016020
Pumo10g00664 928 PRINTS Metabotropic glutamate GPCR signature 137 156 IPR000337 GO:0004930|GO:0007186|GO:0016020
Pumo10g00664 928 Pfam Ligand-gated ion channel 814 845 IPR001320 GO:0015276|GO:0016020
Pumo10g00664 928 FunFam Glutamate receptor 467 582 - -
Pumo10g00664 928 Gene3D - 582 715 - -
Pumo10g00664 928 SMART GluR_14 473 814 IPR001320 GO:0015276|GO:0016020
Pumo10g00664 928 MobiDBLite consensus disorder prediction 884 915 - -
Pumo10g00664 928 Pfam Bacterial extracellular solute-binding proteins, family 3 494 813 IPR001638 -
Pumo10g00664 928 CDD PBP1_GABAb_receptor_plant 38 428 IPR044440 -
Pumo10g00664 928 Gene3D - 761 819 - -
Pumo10g00664 928 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 37 862 IPR015683 -
Pumo10g00664 928 MobiDBLite consensus disorder prediction 884 928 - -
Pumo10g00664 928 Gene3D - 152 425 - -
Pumo10g00664 928 FunFam Glutamate receptor 152 307 - -
Pumo10g00664 928 PIRSF IGluLR_plant 6 928 IPR017103 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00664 Pumo-Chr10 8616763 8622463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00664 31 917 Ion Channels AT1G42540 64.811 0.0 1256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00664 K05387 - gmx:102661260 1733