Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00656 ATGGCTTTGCGTAACACCATTGAAGAGTGGACTGCCAGGAATGAAGCTGCACAGCTGGATATGGCTCGCCGGTCATTGAATATGGGGAGTCCAGAAAATGAAACTCTTCAGACCTTAAAGTATGTCCAGCACATCTGCCGAAGAAGTCGATCAAACAAACACACTGTCCGCAATGCAGGGCTTATACCAATGATTGTTGACATGCTGAAGAGTAGCAGCCGTAAGGTTCGTTGTAGAGCTCTGGAAACCCTTAGAGTTGTGGTAGAGGAAGATGACGAGAATAAGGAATTGTTGGCTGAAGGGGATACTGTGCGTACTGTAGTAAAATTCCTTTCACACGAGCTTTCTAAAGAAAGAGAGGAGGCTGTCTCCTTGCTTTACGAGCTCTCAAAATCTGCAACCCTTTGTGAGAAGATTGGTTCAATCAATGGAGCCATTCTTATATTAGTAGGGATGACAAGCAGCAAATCAGAAGATCTTCTCACTGTTGAGAAGGCTGATAAAACATTGGAGAATCTGGAGAAGTTTGAGAGTAATGTGCGGCAGATGGCTGAAAATGGTAGATTGCAGCCTCTTCTGACCCAGCTGCTTGAAGGTCCACCAGAAACCAAACTCTCCATGGCTACATACCTTGGTGAGCTGGTTTTAAACAATGATGTTAAAGTCCTTGTTGCTGGAGCTGTGGGTTCATCGCTGATCAATATAATGAAAAGTGGTAATATGCAATCAAGAGAAGCAGCACTGAGGGCACTAAATCAGATATCATCATGTGAGCCAAGTGCGAAGATTTTAATAGAGGCTGGAATACTTTCTCCTCTTGTCAATGACCTTTTTGCTGTGGGTCCTAATCAGCTTCCCACACGATTAAAAGAGATCTCCGCTACAATTCTTTCCAGTGTCGTAAACTCAGGAGAAGACTTTTATTCCATTCCATTTGGACCTGATCACCAAACTCTGGTCTCAGAGGATATAGTTCGTAATCTACTCCATCTTATAAGTAACACTGGTCCAGCAATAGAGTGCAAACTTCTCCAAGTTCTTGTTGGACTTACTACTTCTCCAACTACAGTTCTGAGTGTTGTGGCTGCTATCAAAAGCTCCGGTGCCACCATCAGTCTAGTTCAGTTCATTGAGGCACCACAGAAAGATCTGCGTGTAGCTTCCATAAAACTTCTTCAGAATTTGTCTCCTCATATGGGTCAGGAACTAGCTGATGCACTACGCGGCTCGGTTGGACAGCTTGGTAGTCTAATTAAAGTCATATCAGAAAATACAGGAATCACTGAAGAGCAGGCAGCGGCCGTTGGCCTTTTAGCCGATCTTCCTGAAAGGGACTTGGGCCTCACAAGACAGCTACTAGATGAAGGTGCCTTTGTGATGGTCATATCCAGGGTGATTGCCATCAGGCAGGGAGAGATCCGAGGCACTCGCTTCATGACACCATTTCTTGAAGGGCTTGTAAAGATTGTTGCAAGGGTTACTTATGTCTTGGCAGAAGAGCCTGATGCCATTGCACTCTGCCGTGATCACAATCTTGCCGTGCTCTTTATTGATCTGCTTCAGTCCAATGGACTTGATAATGTACAGATGGTTTCTGCTACAGCTCTGGAGAATTTATCCCTAGAATCTAAAAACTTAACCAAATTACCCGAGATGCCATCACCGGGTTTTTGTGCTTCAATGTTTTCATGCTTCAGCAAGCAGCCAGTCATAACTGGATTGTGTAGGCTCCACCGAGGGATATGTTCTTTAAAAGAAACATTTTGTCTGTACGAAGGGCAGGCAGTGCTTAAGTTAGTAGGTCTACTGGACCACACAAATGTGAATGTGGTTGAGGCAGCACTTGCAGCTTTATCTACTTTAATAGATGATGGAGTAGATATTGAGCAAGGGGTGATGATTTTGTGTGAAGCAGAGGGAGTGAAGCCTATACTTGATGTGTTACTTGAGAAAAGAACAGAAACATTGAGGAGGAGGGCAGTTTGGGCAGTGGAGAGACTATTGAGAACAGATGATATAGCCATTGAAGTTTCTGGGGACCAAAATGTGAGTACTGCACTTGTGGATGCTTTCCAGCATGGCGACTATCGAACTAGGCAGACAGCTGAGCGTGCCCTCAAGCATGTTGATAAAATACCAAACTTCTCAGGAATCTTTCCAAACATGGGATGA 2172 0.4434 MALRNTIEEWTARNEAAQLDMARRSLNMGSPENETLQTLKYVQHICRRSRSNKHTVRNAGLIPMIVDMLKSSSRKVRCRALETLRVVVEEDDENKELLAEGDTVRTVVKFLSHELSKEREEAVSLLYELSKSATLCEKIGSINGAILILVGMTSSKSEDLLTVEKADKTLENLEKFESNVRQMAENGRLQPLLTQLLEGPPETKLSMATYLGELVLNNDVKVLVAGAVGSSLINIMKSGNMQSREAALRALNQISSCEPSAKILIEAGILSPLVNDLFAVGPNQLPTRLKEISATILSSVVNSGEDFYSIPFGPDHQTLVSEDIVRNLLHLISNTGPAIECKLLQVLVGLTTSPTTVLSVVAAIKSSGATISLVQFIEAPQKDLRVASIKLLQNLSPHMGQELADALRGSVGQLGSLIKVISENTGITEEQAAAVGLLADLPERDLGLTRQLLDEGAFVMVISRVIAIRQGEIRGTRFMTPFLEGLVKIVARVTYVLAEEPDAIALCRDHNLAVLFIDLLQSNGLDNVQMVSATALENLSLESKNLTKLPEMPSPGFCASMFSCFSKQPVITGLCRLHRGICSLKETFCLYEGQAVLKLVGLLDHTNVNVVEAALAALSTLIDDGVDIEQGVMILCEAEGVKPILDVLLEKRTETLRRRAVWAVERLLRTDDIAIEVSGDQNVSTALVDAFQHGDYRTRQTAERALKHVDKIPNFSGIFPNMG 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00656 723 SUPERFAMILY ARM repeat 372 709 IPR016024 -
Pumo10g00656 723 Gene3D - 3 196 IPR011989 -
Pumo10g00656 723 Coils Coil 166 186 - -
Pumo10g00656 723 Gene3D - 482 713 IPR011989 -
Pumo10g00656 723 SMART arm_5 582 623 IPR000225 GO:0005515
Pumo10g00656 723 SMART arm_5 91 131 IPR000225 GO:0005515
Pumo10g00656 723 SMART arm_5 500 541 IPR000225 GO:0005515
Pumo10g00656 723 SMART arm_5 49 89 IPR000225 GO:0005515
Pumo10g00656 723 SMART arm_5 217 256 IPR000225 GO:0005515
Pumo10g00656 723 SMART arm_5 257 302 IPR000225 GO:0005515
Pumo10g00656 723 SMART arm_5 627 669 IPR000225 GO:0005515
Pumo10g00656 723 SMART arm_5 176 216 IPR000225 GO:0005515
Pumo10g00656 723 Gene3D - 220 396 IPR011989 -
Pumo10g00656 723 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 719 - -
Pumo10g00656 723 SUPERFAMILY ARM repeat 30 442 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00656 Pumo-Chr10 8550378 8556060 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00656 1 723 U-box Gene Family AT1G76390 66.207 0.0 934
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00656 - - gmx:100815928 1326.23