Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g00654 ATGGAGGCAGAGCATCTTCAGGAGACATCCTCAAACGGTATCGGAGGCCTTTACGTGAAAGTGATGACCGACGACCAAATGGAACTGCTCAGGCAACAGATATCTGTCTACGCCACCATTTGCGAACAACTTGTTGAGATGCACAAGGCCGTTACTACCCAACAGGATCTCGCAGGGCTGAGGCTGGGTAATTTGTACTGTGATCCGTTGATGGCGTGCTCTGGACACAAGATAACTGCGAGGCAGCGCTGGACTCCAACGCCGCTGCAGCTTCAAATACTTGAGCGTATTTTTGACGAGGGAAATGGCACTCCCAGCAAGCAGAAGATCAAAGAGATAACCATTGAGCTGGGCCAACATGGCCAAATATCAGAGACAAATGTTTATAACTGGTTCCAGAACAGAAGAGCTCGTTCAAAGCGGAAGCAACTCGCTCCCGCACCCAGTGTTACGGAGCCAGAAGTGGAGACACAAGTTGAGTCTCCAAAAGAGAAAAAGACACGTGCCGAAAGCTTTCAGGTTCAACCCTATGAGAATTCATCACCTCATAGGATCAAGGATATGTACATCCAGAGTCCTGACTTAGGATTTGAACAATTGATGAGTAAAATAGAAGTTGCAGGGCTGCTACAATTCTTATTTTCTTTGAGAAATCTGTGGAATGGATGGGTCGAAGATTCAATTCTTGATTGCAGCTTGGTGGACTCAAGTTTGTTGATGAGACTGTTATATATAGGGGCTTTCGTCCAAATATATTGA 759 0.4611 MEAEHLQETSSNGIGGLYVKVMTDDQMELLRQQISVYATICEQLVEMHKAVTTQQDLAGLRLGNLYCDPLMACSGHKITARQRWTPTPLQLQILERIFDEGNGTPSKQKIKEITIELGQHGQISETNVYNWFQNRRARSKRKQLAPAPSVTEPEVETQVESPKEKKTRAESFQVQPYENSSPHRIKDMYIQSPDLGFEQLMSKIEVAGLLQFLFSLRNLWNGWVEDSILDCSLVDSSLLMRLLYIGAFVQIY 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g00654 252 ProSiteProfiles 'Homeobox' domain profile. 77 142 IPR001356 GO:0003677
Pumo10g00654 252 SMART HOX_1 79 146 IPR001356 GO:0003677
Pumo10g00654 252 MobiDBLite consensus disorder prediction 142 167 - -
Pumo10g00654 252 Gene3D - 82 145 - -
Pumo10g00654 252 SUPERFAMILY Homeodomain-like 80 143 IPR009057 -
Pumo10g00654 252 CDD homeodomain 81 143 IPR001356 GO:0003677
Pumo10g00654 252 PANTHER WUSCHEL-RELATED HOMEOBOX 13 9 200 IPR044559 GO:0003700
Pumo10g00654 252 Pfam Homeodomain 81 141 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g00654 Pumo-Chr10 8525093 8527085 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g00654 17 195 Wox Gene Family AT4G35550 60.513 9.29e-74 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Pumo10g00654 Homeodomain 6.8e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g00654 - - var:108342525 375.17